Variant report

Variant	rs4258697
Chromosome Location	chr18:30591814-30591815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11081791	0.82[CHB][hapmap]
rs12958378	0.82[CHB][hapmap]
rs12958538	0.82[CHB][hapmap]
rs1941272	0.82[CHB][hapmap]
rs4387665	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57411399	0.95[ASN][1000 genomes]
rs7234969	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7236742	0.90[ASN][1000 genomes]
rs7238077	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7239282	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8093250	0.90[ASN][1000 genomes]
rs8096814	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9960087	0.82[AFR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9961301	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909527	chr18:30548902-30908581	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv833617	chr18:30555111-30693587	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1066607	chr18:30562176-30623325	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1058332	chr18:30587430-30775498	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30589600-30592000	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr18:30589600-30592200	Enhancers	HUVEC	blood vessel
3	chr18:30589800-30592000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr18:30589800-30592000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr18:30589800-30593800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr18:30590000-30592000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr18:30590000-30592000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr18:30590400-30592000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr18:30591400-30592000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr18:30591600-30592000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr18:30591800-30593600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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