Variant report

Variant	rs4259728
Chromosome Location	chr1:216859478-216859479
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:216852250..216854082-chr1:216857827..216859800,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11117658	0.82[ASW][hapmap];0.94[CEU][hapmap];0.85[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11572706	0.93[GIH][hapmap]
rs11572745	0.82[ASW][hapmap]
rs11580756	1.00[ASW][hapmap];0.94[CEU][hapmap];0.85[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1339343	0.82[ASW][hapmap];0.94[CEU][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes]
rs1416620	1.00[ASW][hapmap];0.85[MEX][hapmap]
rs17627954	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17679272	0.82[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1833039	0.82[ASW][hapmap]
rs35399012	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216834400-216860400	Weak transcription	Right Ventricle	heart
2	chr1:216840200-216863600	Weak transcription	Fetal Intestine Small	intestine
3	chr1:216844000-216860000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:216844200-216861000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr1:216850800-216860000	Weak transcription	Left Ventricle	heart
6	chr1:216851000-216866000	Weak transcription	Placenta	Placenta
7	chr1:216854000-216860000	Weak transcription	Pancreas	Pancrea
8	chr1:216855600-216860800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr1:216856400-216869800	Weak transcription	Psoas Muscle	Psoas
10	chr1:216856600-216860000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr1:216858800-216860200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr1:216858800-216860400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:216859000-216859800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr1:216859000-216860000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr1:216859000-216860200	Enhancers	Fetal Heart	heart
16	chr1:216859000-216860400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr1:216859200-216860000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr1:216859200-216860200	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr1:216859400-216859800	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr1:216859400-216860200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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