Variant report

Variant	rs426225
Chromosome Location	chr15:76755509-76755510
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76750077..76752606-chr15:76753923..76755525,2	K562	blood:

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10220790	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12708522	0.83[AMR][1000 genomes]
rs1499019	0.83[AMR][1000 genomes]
rs1499020	0.83[AMR][1000 genomes]
rs1499022	0.83[AMR][1000 genomes]
rs157764	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs157765	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs157767	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs157770	0.83[AMR][1000 genomes]
rs157771	1.00[AMR][1000 genomes]
rs157772	0.83[AMR][1000 genomes]
rs157773	0.83[AMR][1000 genomes]
rs157774	0.83[AMR][1000 genomes]
rs157781	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs157782	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs157784	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs157786	0.83[AMR][1000 genomes]
rs157792	0.83[AMR][1000 genomes]
rs157793	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs166905	0.83[AMR][1000 genomes]
rs166932	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs185860	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1878877	0.83[AMR][1000 genomes]
rs190782	0.83[AMR][1000 genomes]
rs2037306	0.83[AMR][1000 genomes]
rs2176622	0.83[AMR][1000 genomes]
rs2244050	0.83[AMR][1000 genomes]
rs2247488	0.83[AMR][1000 genomes]
rs2404735	0.83[AMR][1000 genomes]
rs2439983	0.83[AMR][1000 genomes]
rs2456030	0.83[AMR][1000 genomes]
rs2456032	0.83[AMR][1000 genomes]
rs2456034	0.83[AMR][1000 genomes]
rs2456035	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2456036	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2456037	0.83[AMR][1000 genomes]
rs2456056	0.83[AMR][1000 genomes]
rs2456058	0.83[AMR][1000 genomes]
rs2456059	0.83[AMR][1000 genomes]
rs2456062	0.83[AMR][1000 genomes]
rs2456064	0.83[AMR][1000 genomes]
rs2456068	0.83[AMR][1000 genomes]
rs2456069	0.83[AMR][1000 genomes]
rs2456077	0.83[AMR][1000 genomes]
rs2459364	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2460141	0.83[AMR][1000 genomes]
rs2460143	0.83[AMR][1000 genomes]
rs2460149	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2460157	0.83[AMR][1000 genomes]
rs2460159	0.83[AMR][1000 genomes]
rs2468117	0.83[AMR][1000 genomes]
rs2468125	0.83[AMR][1000 genomes]
rs2469209	0.83[AMR][1000 genomes]
rs2469217	0.83[AMR][1000 genomes]
rs2469218	0.83[AMR][1000 genomes]
rs2469219	0.83[AMR][1000 genomes]
rs2469220	0.83[AMR][1000 genomes]
rs2469221	0.83[AMR][1000 genomes]
rs2469223	0.83[AMR][1000 genomes]
rs2469240	0.83[AMR][1000 genomes]
rs2469243	0.83[AMR][1000 genomes]
rs2469536	0.83[AMR][1000 genomes]
rs2469537	0.83[AMR][1000 genomes]
rs2469545	0.83[AMR][1000 genomes]
rs2469546	0.83[AMR][1000 genomes]
rs2469549	0.83[AMR][1000 genomes]
rs2469550	0.83[AMR][1000 genomes]
rs2469551	0.83[AMR][1000 genomes]
rs2469553	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2469572	0.83[AMR][1000 genomes]
rs2469574	0.83[AMR][1000 genomes]
rs2516308	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs279995	0.83[AMR][1000 genomes]
rs280019	0.83[AMR][1000 genomes]
rs283786	0.83[AMR][1000 genomes]
rs283788	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs283790	0.83[AMR][1000 genomes]
rs283792	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs283794	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs283797	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs283798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs283800	0.83[AMR][1000 genomes]
rs284879	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs284882	0.83[AMR][1000 genomes]
rs284887	0.83[AMR][1000 genomes]
rs284888	0.83[AMR][1000 genomes]
rs284889	0.83[AMR][1000 genomes]
rs284890	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs284894	0.90[AFR][1000 genomes]
rs284900	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2938692	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2938693	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2938694	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2938696	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2938698	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2944379	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2944380	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2948702	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2956872	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2957558	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2957608	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs415439	0.83[AMR][1000 genomes]
rs416812	0.90[AFR][1000 genomes]
rs4886797	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs542148	0.83[AMR][1000 genomes]
rs560598	0.83[AMR][1000 genomes]
rs598011	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6495202	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs654416	0.83[AMR][1000 genomes]
rs7164815	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs8040818	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs937734	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76711600-76767200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:76720800-76763600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:76723000-76757600	Weak transcription	Aorta	Aorta
4	chr15:76725800-76812600	Weak transcription	Left Ventricle	heart
5	chr15:76740600-76757600	Weak transcription	Fetal Intestine Small	intestine
6	chr15:76741000-76757600	Weak transcription	Primary B cells from cord blood	blood
7	chr15:76742800-76762400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr15:76750400-76763800	Weak transcription	Placenta	Placenta
9	chr15:76753200-76757800	Weak transcription	Liver	Liver
10	chr15:76753200-76762800	Weak transcription	Esophagus	oesophagus
11	chr15:76753400-76760800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr15:76753600-76761600	Weak transcription	Adipose Nuclei	Adipose
13	chr15:76753800-76764400	Weak transcription	Fetal Intestine Large	intestine
14	chr15:76754000-76757600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:76754000-76764400	Weak transcription	Brain Hippocampus Middle	brain
16	chr15:76754200-76763600	Weak transcription	Pancreas	Pancrea
17	chr15:76754400-76763600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr15:76754600-76755800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr15:76754600-76757400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr15:76754800-76757600	Weak transcription	Primary T cells from cord blood	blood
21	chr15:76754800-76758000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr15:76754800-76762000	Weak transcription	Ovary	ovary
23	chr15:76754800-76764400	Weak transcription	Fetal Muscle Trunk	muscle
24	chr15:76755200-76761200	Weak transcription	Brain Anterior Caudate	brain

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