Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12391957	0.82[CEU][hapmap]
rs12557265	0.82[CEU][hapmap]
rs12557283	0.82[CEU][hapmap]
rs12687954	0.82[CEU][hapmap]
rs1484854	0.82[CEU][hapmap]
rs1484855	0.90[CEU][hapmap]
rs1921383	1.00[CEU][hapmap]
rs1921386	0.82[CEU][hapmap];0.84[CHB][hapmap]
rs1921388	0.90[CEU][hapmap];0.84[CHB][hapmap]
rs1921394	0.84[CHB][hapmap]
rs1921395	0.82[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap]
rs1921710	0.90[CEU][hapmap];0.84[CHB][hapmap];0.88[JPT][hapmap]
rs2178538	0.82[CEU][hapmap]
rs2404495	0.82[CEU][hapmap]
rs2404496	0.82[CEU][hapmap]
rs2404497	0.82[CEU][hapmap]
rs2896876	0.82[CEU][hapmap]
rs3747385	0.82[CEU][hapmap]
rs3788887	0.87[CHB][hapmap]
rs436628	0.90[CEU][hapmap];0.88[JPT][hapmap]
rs4397574	0.86[CHB][hapmap]
rs4829210	0.82[CEU][hapmap]
rs5926986	1.00[CEU][hapmap]
rs5926987	1.00[CEU][hapmap]
rs5927688	0.89[CEU][hapmap];0.86[CHB][hapmap]
rs5927689	1.00[CEU][hapmap]
rs5972322	1.00[CEU][hapmap]
rs5972325	0.89[CEU][hapmap]
rs5972328	0.82[CEU][hapmap]
rs6527061	0.82[CEU][hapmap]
rs6527062	0.81[CEU][hapmap]
rs6653848	0.82[CEU][hapmap]
rs7057738	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530449	chrX:30962926-31375215	Strong transcription Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3416705	chrX:31099481-31213379	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:31111800-31112000	Flanking Active TSS	GM12878-XiMat	blood

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