Variant report

Variant	rs4262550
Chromosome Location	chr1:220598028-220598029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12022736	0.82[AMR][1000 genomes]
rs12032166	0.82[MEX][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes]
rs12042911	0.82[AMR][1000 genomes]
rs12042936	0.82[AMR][1000 genomes]
rs1338763	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1338764	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1338765	0.84[EUR][1000 genomes]
rs36085749	0.80[AMR][1000 genomes]
rs55646165	0.83[AMR][1000 genomes]
rs58749670	0.81[AMR][1000 genomes]
rs60224244	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61354864	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4262550	GPATCH2	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220583800-220599400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:220594600-220598200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:220595400-220600200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:220595800-220599800	Weak transcription	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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