Variant report

Variant	rs4262797
Chromosome Location	chr12:10973494-10973495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 16 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10743925	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10743926	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10772362	0.88[ASN][1000 genomes]
rs10772365	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10845218	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10845219	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10845221	0.81[EUR][1000 genomes]
rs1548803	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1838345	0.89[ASN][1000 genomes]
rs1838346	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3741845	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3906863	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4763216	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs615239	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs655046	0.89[EUR][1000 genomes]
rs689118	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049362	chr12:10893573-11018850	Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv898776	chr12:10909412-11032045	Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2758294	chr12:10969620-11714921	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
4	esv2759879	chr12:10969620-11714921	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases

mRNA abundance (count:16)

SNP	Gene	Cis/trans	Tissue	Source
rs4262797	PRR4	cis	Esophagus Muscularis	GTEx
rs4262797	TAS2R20	cis	Skin Sun Exposed Lower leg	GTEx
rs4262797	RP11-785H5.1	cis	Skin Sun Exposed Lower leg	GTEx
rs4262797	RP11-434C1.1	cis	Artery Tibial	GTEx
rs4262797	PRR4	cis	Heart Left Ventricle	GTEx
rs4262797	RP11-434C1.1	cis	Muscle Skeletal	GTEx
rs4262797	TAS2R14	cis	Artery Tibial	GTEx
rs4262797	RP11-434C1.1	cis	Esophagus Muscularis	GTEx
rs4262797	TAS2R14	cis	Esophagus Mucosa	GTEx
rs4262797	PRR4	cis	Thyroid	GTEx
rs4262797	RP11-434C1.1	cis	lung	GTEx
rs4262797	RP11-785H5.1	cis	Thyroid	GTEx
rs4262797	TAS2R14	cis	Esophagus Muscularis	GTEx
rs4262797	PRR4	cis	Muscle Skeletal	GTEx
rs4262797	PRR4	cis	lung	GTEx
rs4262797	PRR4	cis	Artery Tibial	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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