Variant report

Variant	rs426400
Chromosome Location	chr11:35096701-35096702
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1097651	1.00[AMR][1000 genomes]
rs12279845	0.85[AMR][1000 genomes]
rs1477564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2114073	1.00[EUR][1000 genomes]
rs2553770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2553781	1.00[EUR][1000 genomes]
rs2553784	1.00[EUR][1000 genomes]
rs2732543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs353596	1.00[AMR][1000 genomes]
rs353603	1.00[AMR][1000 genomes]
rs353609	1.00[AMR][1000 genomes]
rs353611	1.00[AMR][1000 genomes]
rs587876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs879488	1.00[EUR][1000 genomes]
rs890241	1.00[EUR][1000 genomes]
rs890242	1.00[EUR][1000 genomes]
rs919039	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv430371	chr11:34975067-35111292	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv1826391	chr11:35000983-35098193	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv540999	chr11:35021936-35185471	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv2758263	chr11:35029933-35226784	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	esv2759818	chr11:35029933-35238578	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv541000	chr11:35053717-35185471	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv541001	chr11:35053717-35224624	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	esv2757437	chr11:35067482-35238578	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	esv2752912	chr11:35074167-35238578	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv508623	chr11:35094933-35203363	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35088600-35099000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:35088800-35099200	Weak transcription	Stomach Mucosa	stomach
3	chr11:35089200-35098000	Weak transcription	Small Intestine	intestine
4	chr11:35091000-35098000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:35091200-35097600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr11:35091200-35099800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:35092200-35099000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:35094200-35097600	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr11:35094200-35097600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr11:35094400-35097600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr11:35094400-35097600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr11:35094800-35096800	Weak transcription	Primary T cells from cord blood	blood
13	chr11:35094800-35098200	Weak transcription	Thymus	Thymus
14	chr11:35095600-35097800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:35095600-35099200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:35095800-35096800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr11:35095800-35096800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr11:35095800-35097800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr11:35095800-35097800	Weak transcription	K562	blood
20	chr11:35095800-35098000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr11:35095800-35098400	Weak transcription	HMEC	breast
22	chr11:35095800-35098400	Weak transcription	NHEK	skin
23	chr11:35095800-35099000	Weak transcription	Osteobl	bone
24	chr11:35095800-35099200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:35095800-35099200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:35095800-35099200	Weak transcription	NHDF-Ad	bronchial
27	chr11:35096000-35096800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr11:35096000-35097600	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr11:35096400-35097600	Weak transcription	GM12878-XiMat	blood
30	chr11:35096400-35099200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr11:35096600-35099200	Enhancers	Primary T helper cells fromperipheralblood	blood

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