Variant report

Variant	rs426515
Chromosome Location	chr5:98038021-98038022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs149247	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs150822	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs159162	0.85[EUR][1000 genomes]
rs1592853	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs160710	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs160711	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs160713	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs160714	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs160716	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs160720	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs162675	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs176892	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs184143	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2112421	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2545670	0.91[EUR][1000 genomes]
rs2545692	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2547957	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2662244	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs294030	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs316506	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs316508	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs316510	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs373070	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs384863	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs392132	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs403888	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs408005	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs408400	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs439509	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs442074	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs455749	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs455800	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs456244	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs456367	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs457215	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs458154	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs459865	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs460295	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs461258	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs461548	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs462719	0.80[EUR][1000 genomes]
rs463309	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs463872	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs464246	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs465003	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs465427	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60756038	0.81[AFR][1000 genomes]
rs67595117	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs981567	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029509	chr5:97888644-98040172	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1032060	chr5:98022226-98093492	Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv537817	chr5:98022226-98093492	Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98026000-98040000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:98037600-98038200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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