Variant report

Variant	rs4268458
Chromosome Location	chr10:52576488-52576489
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52553366..52555784-chr10:52575135..52576660,2	K562	blood:
2	chr10:52553280..52555784-chr10:52575135..52577429,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10761546	0.87[ASN][1000 genomes]
rs10761548	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821678	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10821698	0.93[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap]
rs10821706	0.81[ASN][1000 genomes]
rs10821825	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821846	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10994196	0.92[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap]
rs10994489	0.88[ASN][1000 genomes]
rs10994492	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10994504	0.88[ASN][1000 genomes]
rs12358745	0.88[ASN][1000 genomes]
rs16751	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3802531	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4245009	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4531415	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4550168	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4617537	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4935006	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4935007	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4935178	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs4935191	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4935192	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56033380	0.80[ASN][1000 genomes]
rs61858572	0.83[ASN][1000 genomes]
rs6479701	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs7068127	0.91[JPT][hapmap]
rs7074369	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7089428	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089955	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7895606	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7913937	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7917358	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035197	chr10:52446582-52622349	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52565800-52592000	Weak transcription	Stomach Mucosa	stomach
2	chr10:52573400-52588200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:52574400-52577800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:52574400-52586600	Strong transcription	Liver	Liver
5	chr10:52574800-52580400	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr10:52575400-52576800	Strong transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:52575400-52580400	Strong transcription	Fetal Intestine Large	intestine
8	chr10:52575400-52580600	Strong transcription	Rectal Mucosa Donor 31	rectum
9	chr10:52575400-52585600	Strong transcription	HepG2	liver
10	chr10:52575800-52577200	Strong transcription	Duodenum Mucosa	Duodenum
11	chr10:52575800-52577200	Strong transcription	Pancreas	Pancrea
12	chr10:52576400-52576800	Strong transcription	Fetal Intestine Small	intestine

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