Variant report

Variant	rs4281373
Chromosome Location	chr1:211450300-211450301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211444424..211446748-chr1:211449200..211451604,3	K562	blood:
2	chr1:211432881..211436837-chr1:211447247..211451397,4	K562	blood:
3	chr1:211449704..211451209-chr1:211461205..211463374,2	K562	blood:
4	chr1:211444425..211446748-chr1:211449200..211451124,2	K562	blood:

Variant related genes	Relation type
ENSG00000117625	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10732682	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10779554	0.86[EUR][1000 genomes]
rs1084983	0.83[EUR][1000 genomes]
rs10863886	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10863887	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1533219	0.83[EUR][1000 genomes]
rs1877476	0.83[EUR][1000 genomes]
rs1983259	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2358215	0.83[EUR][1000 genomes]
rs3123302	0.83[EUR][1000 genomes]
rs3855878	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4278412	0.82[AFR][1000 genomes]
rs4279906	0.89[AFR][1000 genomes]
rs4347268	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4370817	0.86[EUR][1000 genomes]
rs4556425	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4951517	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4951735	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4951737	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4951738	0.83[EUR][1000 genomes]
rs4951739	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4951740	0.83[EUR][1000 genomes]
rs6540675	0.86[EUR][1000 genomes]
rs6540676	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6540678	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6657779	0.82[AFR][1000 genomes]
rs6663627	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6671526	0.86[EUR][1000 genomes]
rs6688682	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6692815	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7517135	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs784374	0.83[EUR][1000 genomes]
rs784375	0.83[EUR][1000 genomes]
rs784388	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv159013	chr1:211449555-211453750	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211434400-211453200	Weak transcription	Small Intestine	intestine
2	chr1:211434400-211453400	Weak transcription	Spleen	Spleen
3	chr1:211434400-211454800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:211434400-211487000	Weak transcription	Gastric	stomach
5	chr1:211434600-211453400	Weak transcription	Aorta	Aorta
6	chr1:211434600-211454000	Weak transcription	Pancreas	Pancrea
7	chr1:211434600-211462600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr1:211434600-211478200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr1:211434800-211453000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:211434800-211453400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr1:211434800-211462600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr1:211434800-211464800	Weak transcription	Right Ventricle	heart
13	chr1:211434800-211474200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr1:211435600-211460800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:211436200-211456800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:211437000-211454600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr1:211437800-211451000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr1:211438800-211478800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr1:211439800-211478200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr1:211440000-211458200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr1:211440600-211454400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr1:211440800-211481800	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr1:211440800-211483600	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr1:211441200-211461200	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr1:211443000-211480000	Strong transcription	Dnd41	blood
26	chr1:211443000-211480400	Strong transcription	Placenta	Placenta
27	chr1:211443200-211460800	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr1:211443200-211484000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr1:211443600-211454400	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr1:211443800-211460400	Strong transcription	Primary B cells from peripheral blood	blood
31	chr1:211443800-211478200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr1:211444200-211459400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr1:211444400-211454000	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr1:211444400-211479000	Strong transcription	Liver	Liver
35	chr1:211444600-211454400	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr1:211444600-211454400	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr1:211444600-211457000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr1:211444600-211457200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr1:211444600-211459000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr1:211444600-211459800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr1:211444600-211471000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr1:211444600-211478000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr1:211444600-211479200	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr1:211444800-211454600	Strong transcription	K562	blood
45	chr1:211444800-211455400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr1:211444800-211460600	Strong transcription	HSMM	muscle
47	chr1:211444800-211491200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr1:211445000-211454000	Strong transcription	NHDF-Ad	bronchial
49	chr1:211445000-211454400	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr1:211445200-211451600	Weak transcription	Brain Germinal Matrix	brain

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