Variant report

Variant	rs4282413
Chromosome Location	chr6:56191184-56191185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10733186	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10755782	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10755783	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10807514	1.00[AMR][1000 genomes]
rs10948998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4266497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4288206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4348307	1.00[AMR][1000 genomes]
rs4374815	1.00[AMR][1000 genomes]
rs4385303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4388289	1.00[AMR][1000 genomes]
rs4626424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5002552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6910756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6915844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6933632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73448977	1.00[AMR][1000 genomes]
rs73747783	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7775020	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7775317	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7775403	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475673	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	esv3361177	chr6:56189443-56191691	Weak transcription	n/a	n/a	inside rSNPs	diseases
3	esv3338543	chr6:56189793-56191491	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56189400-56193600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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