Variant report

Variant	rs4288884
Chromosome Location	chr13:76604364-76604365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1074098	0.82[ASN][1000 genomes]
rs1119198	0.88[ASN][1000 genomes]
rs11619151	0.88[ASN][1000 genomes]
rs1461986	0.88[ASN][1000 genomes]
rs1576532	0.88[ASN][1000 genomes]
rs28605869	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28607151	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4427681	0.88[ASN][1000 genomes]
rs715894	0.88[ASN][1000 genomes]
rs715895	0.88[ASN][1000 genomes]
rs7330847	0.88[ASN][1000 genomes]
rs7983891	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7985763	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7991027	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7997251	0.88[ASN][1000 genomes]
rs7998455	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7999912	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9318391	0.88[ASN][1000 genomes]
rs9318392	0.88[ASN][1000 genomes]
rs9565222	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9565223	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9573727	0.88[ASN][1000 genomes]
rs9573735	0.88[ASN][1000 genomes]
rs9573745	0.86[ASN][1000 genomes]
rs9593152	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9600634	0.88[ASN][1000 genomes]
rs9600635	0.88[ASN][1000 genomes]
rs9635003	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832649	chr13:76424872-76657891	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1054431	chr13:76460431-76885094	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541837	chr13:76460431-76885094	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76601600-76605800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:76602000-76605000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr13:76603000-76604400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr13:76603400-76604400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr13:76603600-76604800	Enhancers	Primary hematopoietic stem cells	blood
6	chr13:76604000-76604400	Flanking Active TSS	K562	blood
7	chr13:76604000-76605000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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