Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1027380	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11711630	0.82[ASN][1000 genomes]
rs11715107	0.82[ASN][1000 genomes]
rs13087416	0.82[ASN][1000 genomes]
rs13095887	0.80[ASN][1000 genomes]
rs1390083	0.82[ASN][1000 genomes]
rs1495133	0.89[ASN][1000 genomes]
rs17342342	0.83[ASN][1000 genomes]
rs2055155	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2088129	0.89[ASN][1000 genomes]
rs2132147	0.89[ASN][1000 genomes]
rs2132149	0.80[ASN][1000 genomes]
rs36073188	0.80[ASN][1000 genomes]
rs4334589	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4858065	0.83[ASN][1000 genomes]
rs4858066	0.82[ASN][1000 genomes]
rs4858488	0.87[ASN][1000 genomes]
rs4858498	0.88[ASN][1000 genomes]
rs6769959	0.85[ASN][1000 genomes]
rs6790185	0.89[ASN][1000 genomes]
rs6806387	0.91[ASN][1000 genomes]
rs73149661	0.83[ASN][1000 genomes]
rs7618910	0.88[ASN][1000 genomes]
rs7629327	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7635882	0.89[ASN][1000 genomes]
rs7636532	0.83[ASN][1000 genomes]
rs7648425	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs903519	0.82[ASN][1000 genomes]
rs9826103	0.89[ASN][1000 genomes]
rs9840015	0.89[ASN][1000 genomes]
rs9844558	0.89[ASN][1000 genomes]
rs9848331	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv589947	chr3:23277838-23403943	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv589948	chr3:23287141-23390221	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1004417	chr3:23318797-23389422	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv967177	chr3:23337450-23350050	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23337400-23343000	Weak transcription	Psoas Muscle	Psoas
2	chr3:23337600-23358400	Weak transcription	Primary B cells from peripheral blood	blood

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