The 2.0 version of rSNPBase

Variant report

Variant rs4300228
Chromosome Location chr1:93388884-93388885
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:93366400-93409200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
2 chr1:93367000-93390400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
3 chr1:93369000-93394200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
4 chr1:93370400-93395000 Weak transcription Primary T regulatory cells fromperipheralblood blood
5 chr1:93370600-93395000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
6 chr1:93376000-93395400 Weak transcription Breast Myoepithelial Primary Cells Breast
7 chr1:93376000-93400400 Weak transcription Primary T cells fromperipheralblood blood
8 chr1:93376800-93395400 Weak transcription Primary T helper cells fromperipheralblood blood
9 chr1:93377000-93401400 Weak transcription Dnd41 blood
10 chr1:93381000-93395400 Weak transcription Thymus Thymus
11 chr1:93382200-93394800 Weak transcription Gastric stomach
12 chr1:93383000-93395800 Weak transcription Primary T helper naive cells from peripheral blood blood
13 chr1:93383400-93389200 Weak transcription Fetal Lung lung
14 chr1:93383400-93395000 Weak transcription NHLF lung
15 chr1:93383400-93396800 Weak transcription Fetal Stomach stomach
16 chr1:93383600-93390600 Weak transcription HepG2 liver
17 chr1:93383600-93394600 Weak transcription Primary T helper cells PMA-I stimulated --
18 chr1:93384600-93389800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
19 chr1:93384800-93399200 Weak transcription Fetal Intestine Small intestine
20 chr1:93385800-93395200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr1:93387200-93390000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr1:93387200-93392000 Weak transcription Primary B cells from peripheral blood blood
23 chr1:93387200-93393600 Weak transcription Primary T cells from cord blood blood
24 chr1:93387200-93400400 Weak transcription Left Ventricle heart
25 chr1:93387400-93390000 Weak transcription Sigmoid Colon Sigmoid Colon
26 chr1:93387400-93392400 Weak transcription Primary B cells from cord blood blood
27 chr1:93388000-93389400 Enhancers Brain Inferior Temporal Lobe brain
28 chr1:93388000-93390200 Enhancers Adipose Nuclei Adipose
29 chr1:93388200-93398200 Weak transcription Colon Smooth Muscle Colon
30 chr1:93388200-93408800 Weak transcription Pancreas Pancrea
31 chr1:93388400-93389400 Enhancers Liver Liver
32 chr1:93388400-93390000 Enhancers K562 blood
33 chr1:93388400-93394800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
34 chr1:93388600-93389000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr1:93388600-93389000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
36 chr1:93388600-93389000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
37 chr1:93388600-93389200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr1:93388600-93389200 Enhancers NHDF-Ad bronchial
39 chr1:93388600-93389200 Enhancers Osteobl bone
40 chr1:93388600-93393400 Weak transcription Brain Anterior Caudate brain
41 chr1:93388800-93390400 Active TSS A549 lung
42 chr1:93388800-93392400 Weak transcription Brain Substantia Nigra brain
43 chr1:93388800-93393000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015