Variant report

Variant	rs4302670
Chromosome Location	chr6:56176161-56176162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56175903..56178610-chr6:56182737..56184492,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs4075390	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4128443	0.93[EUR][1000 genomes]
rs4348306	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4401668	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4432980	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4455670	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4596476	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4602722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712122	0.81[AFR][1000 genomes]
rs4712129	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4715608	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4715615	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6459143	0.85[ASN][1000 genomes]
rs6908492	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6916683	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6918390	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6918405	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6918460	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6918489	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6918786	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6924236	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6924834	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6925039	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7748964	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7755746	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7766466	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7766685	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9349811	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9357903	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9357904	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9357905	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9357908	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367680	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9370507	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9370508	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9370509	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9370510	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9370520	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382616	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396193	0.83[AFR][1000 genomes]
rs9396195	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9396200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396201	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9475661	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9689751	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56174600-56180000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:56175000-56177800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:56175200-56176400	Enhancers	Fetal Lung	lung
4	chr6:56176000-56176600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:56176000-56177200	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links