Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11961060	0.82[ASN][1000 genomes]
rs1492574	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4131416	0.82[ASN][1000 genomes]
rs4131417	0.81[ASN][1000 genomes]
rs4333428	0.80[ASN][1000 genomes]
rs4478418	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6903974	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6908890	0.82[ASN][1000 genomes]
rs6918187	0.82[ASN][1000 genomes]
rs6919129	0.82[ASN][1000 genomes]
rs7453224	0.81[ASN][1000 genomes]
rs7745789	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7749721	0.82[ASN][1000 genomes]
rs7764084	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7775952	0.82[ASN][1000 genomes]
rs9371461	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9372055	0.89[ASN][1000 genomes]
rs9384546	0.94[ASN][1000 genomes]
rs9384551	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9384557	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9397330	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9398010	0.88[ASN][1000 genomes]
rs9480466	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9480468	0.85[ASN][1000 genomes]
rs9480469	0.82[ASN][1000 genomes]
rs9480470	0.81[ASN][1000 genomes]
rs9480471	0.81[ASN][1000 genomes]
rs9480472	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150825000-150830800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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