Variant report

Variant	rs4306347
Chromosome Location	chr12:50892117-50892118
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DIP2B-1	chr12:50892095-50892207	l_645_chr12:50890975-50903828_testes

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10506293	0.90[EUR][1000 genomes]
rs10506296	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10735826	0.96[ASN][1000 genomes]
rs10783367	0.94[ASN][1000 genomes]
rs10783368	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10876041	0.96[ASN][1000 genomes]
rs10876044	0.96[ASN][1000 genomes]
rs10876048	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10876054	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10876057	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11169422	0.90[EUR][1000 genomes]
rs11614911	0.96[ASN][1000 genomes]
rs12099511	0.90[EUR][1000 genomes]
rs12099615	1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12296379	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12307602	0.90[EUR][1000 genomes]
rs12320201	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12817256	0.92[ASN][1000 genomes]
rs13328926	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1402693	1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1521515	0.86[EUR][1000 genomes]
rs1521517	0.95[EUR][1000 genomes]
rs17119774	0.90[EUR][1000 genomes]
rs17124672	0.90[EUR][1000 genomes]
rs17124888	0.90[EUR][1000 genomes]
rs17124907	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1815010	0.86[EUR][1000 genomes]
rs1996750	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2246840	0.86[EUR][1000 genomes]
rs2252595	0.91[EUR][1000 genomes]
rs2684886	0.86[EUR][1000 genomes]
rs2684890	0.86[EUR][1000 genomes]
rs2684891	0.86[EUR][1000 genomes]
rs2684902	0.95[EUR][1000 genomes]
rs2684906	0.95[EUR][1000 genomes]
rs2700486	0.86[EUR][1000 genomes]
rs28414775	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28479152	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2947617	0.95[EUR][1000 genomes]
rs3803181	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3825401	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4129355	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4132432	0.80[AMR][1000 genomes]
rs4143663	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4257057	0.90[EUR][1000 genomes]
rs4450234	0.90[EUR][1000 genomes]
rs4517607	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4562889	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4768848	0.92[ASN][1000 genomes]
rs4768885	0.96[ASN][1000 genomes]
rs4768886	0.96[ASN][1000 genomes]
rs4768887	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4768894	0.86[ASN][1000 genomes]
rs4768915	0.86[EUR][1000 genomes]
rs56671180	0.90[EUR][1000 genomes]
rs56753963	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56818625	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57283487	0.90[EUR][1000 genomes]
rs57293958	0.90[EUR][1000 genomes]
rs57328764	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57512759	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57578212	0.90[EUR][1000 genomes]
rs57811009	0.90[EUR][1000 genomes]
rs57828015	0.90[EUR][1000 genomes]
rs58301497	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58500867	0.90[EUR][1000 genomes]
rs58869591	0.85[EUR][1000 genomes]
rs58888905	0.90[EUR][1000 genomes]
rs58915267	0.85[EUR][1000 genomes]
rs58916974	0.90[EUR][1000 genomes]
rs58943330	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59194948	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59683461	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59696942	0.90[EUR][1000 genomes]
rs59968707	0.90[EUR][1000 genomes]
rs60010359	0.90[EUR][1000 genomes]
rs60198651	0.90[EUR][1000 genomes]
rs60201334	0.90[EUR][1000 genomes]
rs60239257	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60242613	0.90[EUR][1000 genomes]
rs60396677	0.90[EUR][1000 genomes]
rs60420087	0.90[EUR][1000 genomes]
rs60494920	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60743903	0.90[EUR][1000 genomes]
rs60908906	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61578731	0.90[EUR][1000 genomes]
rs7131993	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7132443	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7135222	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7301125	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7302749	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7303202	0.86[EUR][1000 genomes]
rs7304262	0.90[EUR][1000 genomes]
rs7306387	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7310507	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7487645	1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7953880	1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7955176	0.90[EUR][1000 genomes]
rs7955310	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7957060	0.95[ASN][1000 genomes]
rs7969251	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7974480	0.90[EUR][1000 genomes]
rs7978443	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7979184	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs939631	0.86[EUR][1000 genomes]
rs951591	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9634264	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9738596	0.87[ASN][1000 genomes]
rs9804759	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1820967	chr12:50856613-51002088	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:50890400-50892600	ZNF genes & repeats	Liver	Liver
2	chr12:50891000-50892400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
3	chr12:50891800-50892600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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