Variant report
Variant | rs4306948 |
---|---|
Chromosome Location | chr4:86475905-86475906 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10013096 | 1.00[ASN][1000 genomes] |
rs10026950 | 0.85[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs10027024 | 0.87[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs10516749 | 1.00[ASN][1000 genomes] |
rs10516751 | 1.00[ASN][1000 genomes] |
rs1156516 | 1.00[ASN][1000 genomes] |
rs11931565 | 1.00[ASN][1000 genomes] |
rs11932352 | 1.00[ASN][1000 genomes] |
rs11936036 | 1.00[ASN][1000 genomes] |
rs11936794 | 1.00[ASN][1000 genomes] |
rs11937495 | 1.00[ASN][1000 genomes] |
rs11942163 | 1.00[ASN][1000 genomes] |
rs13114627 | 1.00[ASN][1000 genomes] |
rs13115058 | 1.00[ASN][1000 genomes] |
rs1481772 | 1.00[ASN][1000 genomes] |
rs1481773 | 1.00[ASN][1000 genomes] |
rs1481776 | 1.00[ASN][1000 genomes] |
rs1481782 | 1.00[ASN][1000 genomes] |
rs1481783 | 1.00[ASN][1000 genomes] |
rs1548105 | 1.00[ASN][1000 genomes] |
rs1548106 | 1.00[ASN][1000 genomes] |
rs1548108 | 1.00[ASN][1000 genomes] |
rs17010302 | 1.00[ASN][1000 genomes] |
rs17010321 | 1.00[ASN][1000 genomes] |
rs17010342 | 1.00[ASN][1000 genomes] |
rs17010356 | 1.00[ASN][1000 genomes] |
rs17010358 | 1.00[ASN][1000 genomes] |
rs17010377 | 1.00[ASN][1000 genomes] |
rs17010393 | 1.00[ASN][1000 genomes] |
rs17010402 | 1.00[ASN][1000 genomes] |
rs17010406 | 1.00[ASN][1000 genomes] |
rs1905033 | 1.00[ASN][1000 genomes] |
rs1905035 | 0.90[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs1905036 | 0.87[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs1982699 | 1.00[ASN][1000 genomes] |
rs1982701 | 1.00[ASN][1000 genomes] |
rs1994063 | 1.00[ASN][1000 genomes] |
rs1994067 | 1.00[ASN][1000 genomes] |
rs1994069 | 1.00[ASN][1000 genomes] |
rs1994070 | 1.00[ASN][1000 genomes] |
rs1994071 | 1.00[ASN][1000 genomes] |
rs1994072 | 1.00[ASN][1000 genomes] |
rs1994073 | 1.00[ASN][1000 genomes] |
rs1994074 | 1.00[ASN][1000 genomes] |
rs2086533 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs2086535 | 0.91[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs2101117 | 0.84[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs2101118 | 0.85[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs2101119 | 0.88[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs2101120 | 0.91[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs2128091 | 0.85[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs2128093 | 0.81[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs2128095 | 0.90[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs2128096 | 0.90[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs2128098 | 0.90[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs2128099 | 0.90[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs2170419 | 0.90[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs2200050 | 1.00[ASN][1000 genomes] |
rs2869351 | 1.00[ASN][1000 genomes] |
rs2869353 | 0.91[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs2869354 | 0.91[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs2869356 | 0.89[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs2869359 | 1.00[ASN][1000 genomes] |
rs3960322 | 0.91[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs4327478 | 1.00[ASN][1000 genomes] |
rs4327479 | 1.00[ASN][1000 genomes] |
rs4348085 | 1.00[ASN][1000 genomes] |
rs4374615 | 0.93[AFR][1000 genomes];0.88[AMR][1000 genomes] |
rs4450923 | 1.00[ASN][1000 genomes] |
rs4450924 | 1.00[ASN][1000 genomes] |
rs4450925 | 1.00[ASN][1000 genomes] |
rs4466034 | 0.91[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs4467559 | 0.89[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs4525966 | 1.00[ASN][1000 genomes] |
rs4535330 | 0.91[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs4693116 | 0.85[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs4693706 | 1.00[ASN][1000 genomes] |
rs4693707 | 1.00[ASN][1000 genomes] |
rs58330660 | 1.00[ASN][1000 genomes] |
rs59472265 | 1.00[ASN][1000 genomes] |
rs60617422 | 1.00[ASN][1000 genomes] |
rs6531826 | 1.00[ASN][1000 genomes] |
rs6531828 | 1.00[ASN][1000 genomes] |
rs6814983 | 1.00[ASN][1000 genomes] |
rs6828388 | 1.00[ASN][1000 genomes] |
rs6828628 | 1.00[ASN][1000 genomes] |
rs6829120 | 1.00[ASN][1000 genomes] |
rs6829628 | 1.00[ASN][1000 genomes] |
rs6841899 | 1.00[ASN][1000 genomes] |
rs72654089 | 1.00[ASN][1000 genomes] |
rs72654093 | 1.00[ASN][1000 genomes] |
rs72967858 | 1.00[ASN][1000 genomes] |
rs72967861 | 1.00[ASN][1000 genomes] |
rs72967867 | 1.00[ASN][1000 genomes] |
rs72967869 | 1.00[ASN][1000 genomes] |
rs72967871 | 1.00[ASN][1000 genomes] |
rs73832792 | 1.00[ASN][1000 genomes] |
rs73832798 | 1.00[ASN][1000 genomes] |
rs73832799 | 1.00[ASN][1000 genomes] |
rs7679025 | 1.00[ASN][1000 genomes] |
rs7684170 | 1.00[ASN][1000 genomes] |
rs7684562 | 1.00[ASN][1000 genomes] |
rs7685458 | 1.00[ASN][1000 genomes] |
rs7685580 | 1.00[ASN][1000 genomes] |
rs9307004 | 1.00[ASN][1000 genomes] |
rs9307005 | 1.00[ASN][1000 genomes] |
rs931179 | 1.00[ASN][1000 genomes] |
rs931180 | 1.00[ASN][1000 genomes] |
rs964836 | 1.00[ASN][1000 genomes] |
rs971422 | 0.89[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs971423 | 0.89[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs971424 | 0.89[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs971425 | 0.89[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs971426 | 0.89[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs9999410 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv519588 | chr4:85762385-86591202 | Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
2 | nsv461566 | chr4:85988032-86725502 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv594747 | chr4:85988032-86725502 | Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
4 | nsv470048 | chr4:85998783-86720838 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:86454000-86476600 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
2 | chr4:86461000-86476600 | Weak transcription | Left Ventricle | heart |
3 | chr4:86464600-86476400 | Weak transcription | Gastric | stomach |
4 | chr4:86466800-86480600 | Weak transcription | Esophagus | oesophagus |
5 | chr4:86470200-86476200 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
6 | chr4:86474400-86477800 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
7 | chr4:86475200-86476600 | Weak transcription | Primary neutrophils fromperipheralblood | blood |
8 | chr4:86475400-86476400 | Weak transcription | HSMM | muscle |
9 | chr4:86475400-86476600 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
10 | chr4:86475600-86476400 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
11 | chr4:86475600-86476400 | Weak transcription | Primary B cells from cord blood | blood |
12 | chr4:86475600-86476600 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
13 | chr4:86475600-86488000 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
14 | chr4:86475800-86482400 | Enhancers | Primary B cells from peripheral blood | blood |