Variant report

Variant	rs4314623
Chromosome Location	chr8:99273045-99273046
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:99256959..99259667-chr8:99271247..99273915,3	MCF-7	breast:
2	chr8:99272320..99273944-chr8:99288240..99290604,2	MCF-7	breast:
3	chr8:99270866..99273832-chr8:99304414..99306479,5	MCF-7	breast:
4	chr8:99258977..99261249-chr8:99270985..99273813,2	MCF-7	breast:
5	chr8:99271141..99273979-chr8:99304755..99308094,7	MCF-7	breast:
6	chr8:99267147..99269398-chr8:99270200..99273584,3	MCF-7	breast:
7	chr8:99271786..99273294-chr8:99302806..99304675,2	MCF-7	breast:
8	chr8:99219935..99221824-chr8:99271736..99273785,2	MCF-7	breast:
9	chr8:99270989..99273601-chr8:99316752..99319337,2	MCF-7	breast:
10	chr8:99178658..99180420-chr8:99270653..99273641,2	MCF-7	breast:
11	chr8:99253235..99256078-chr8:99270762..99273176,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13263283	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13264971	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13268447	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7016352	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99240600-99294200	Weak transcription	Ovary	ovary
2	chr8:99253400-99273200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr8:99260400-99304400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr8:99261000-99273200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:99265400-99298400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr8:99265400-99304200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr8:99272200-99283600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:99272400-99274800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:99272400-99288600	Weak transcription	Fetal Lung	lung
10	chr8:99273000-99273200	Enhancers	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links