Variant report

Variant	rs4317421
Chromosome Location	chr6:150818824-150818825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150817308..150819383-chr6:150821139..150822761,2	K562	blood:
2	chr6:150812964..150816383-chr6:150817541..150822095,5	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11961060	0.86[ASN][1000 genomes]
rs4131416	0.86[ASN][1000 genomes]
rs4131417	0.85[ASN][1000 genomes]
rs4282419	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4333428	0.84[ASN][1000 genomes]
rs4555931	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62432561	0.80[ASN][1000 genomes]
rs6557543	0.80[ASN][1000 genomes]
rs6903974	0.80[ASN][1000 genomes]
rs6904218	0.81[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs6908890	0.81[CHD][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs6913362	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6918187	0.90[CHB][hapmap];0.97[CHD][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs6919129	0.90[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs6925854	0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7341223	0.80[ASN][1000 genomes]
rs7341280	0.80[ASN][1000 genomes]
rs7453224	0.86[ASN][1000 genomes]
rs7749721	0.86[ASN][1000 genomes]
rs7756438	0.80[ASN][1000 genomes]
rs7766048	0.84[ASN][1000 genomes]
rs7767400	0.84[ASN][1000 genomes]
rs7773743	0.84[ASN][1000 genomes]
rs7775952	0.86[ASN][1000 genomes]
rs9322262	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9322263	0.90[CHB][hapmap];0.97[CHD][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs9371454	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9372056	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9372063	0.95[CHB][hapmap];0.93[JPT][hapmap]
rs9383828	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9384547	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9384548	0.82[ASN][1000 genomes]
rs9384550	0.85[ASN][1000 genomes]
rs9384556	0.81[ASN][1000 genomes]
rs9397324	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9398011	0.85[ASN][1000 genomes]
rs9398014	0.84[ASN][1000 genomes]
rs9480466	0.84[ASN][1000 genomes]
rs9480467	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480468	0.84[ASN][1000 genomes]
rs9480469	0.86[ASN][1000 genomes]
rs9480470	0.85[ASN][1000 genomes]
rs9480471	0.86[ASN][1000 genomes]
rs9480472	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150815200-150819000	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:150817400-150820800	Weak transcription	Small Intestine	intestine

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