Variant report
| Variant | rs4317508 |
|---|---|
| Chromosome Location | chr7:104297944-104297945 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:104296839..104298758-chr7:104300188..104302569,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:46)
| rs_ID | r2[population] |
|---|---|
| rs10216008 | 0.84[AMR][1000 genomes] |
| rs10231269 | 0.83[EUR][1000 genomes] |
| rs10242238 | 1.00[CEU][hapmap] |
| rs10245966 | 1.00[CEU][hapmap] |
| rs10246540 | 1.00[CEU][hapmap] |
| rs10265185 | 1.00[CEU][hapmap] |
| rs10275240 | 1.00[CEU][hapmap] |
| rs10277884 | 1.00[CEU][hapmap] |
| rs10280659 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10487218 | 1.00[CEU][hapmap] |
| rs11760660 | 1.00[CEU][hapmap] |
| rs11761854 | 0.87[CEU][hapmap] |
| rs11762558 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11766478 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs11770573 | 1.00[CEU][hapmap] |
| rs11773248 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11977439 | 1.00[CEU][hapmap] |
| rs13438590 | 1.00[CEU][hapmap] |
| rs17139574 | 0.90[ASN][1000 genomes] |
| rs17139736 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs17421950 | 1.00[CEU][hapmap] |
| rs17490468 | 0.85[CEU][hapmap];1.00[YRI][hapmap] |
| rs17490509 | 1.00[CEU][hapmap] |
| rs17490551 | 1.00[CEU][hapmap] |
| rs17490586 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs1990704 | 1.00[CEU][hapmap] |
| rs2193204 | 1.00[CEU][hapmap] |
| rs2193212 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs2891725 | 1.00[CEU][hapmap] |
| rs2891729 | 1.00[CEU][hapmap] |
| rs35022976 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3919550 | 1.00[CEU][hapmap] |
| rs4131017 | 1.00[YRI][hapmap] |
| rs4236571 | 1.00[CEU][hapmap] |
| rs4620217 | 1.00[CEU][hapmap] |
| rs59929156 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6948948 | 1.00[CEU][hapmap] |
| rs6964099 | 1.00[CEU][hapmap] |
| rs6967399 | 1.00[CEU][hapmap] |
| rs73181816 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73181817 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7791120 | 1.00[CEU][hapmap] |
| rs7801040 | 1.00[CEU][hapmap] |
| rs7805947 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs929661 | 1.00[CEU][hapmap] |
| rs962648 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024532 | chr7:104281393-104299847 | Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
