Variant report

Variant	rs4326109
Chromosome Location	chr5:27217309-27217310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:27148199..27150659-chr5:27216557..27219438,3	K562	blood:
2	chr5:27216556..27218871-chr5:27225893..27228267,2	K562	blood:
3	chr5:27170828..27173220-chr5:27216405..27218004,2	K562	blood:
4	chr5:27212676..27215964-chr5:27216414..27219367,5	K562	blood:
5	chr5:27216775..27219556-chr5:27474982..27476487,2	K562	blood:
6	chr5:27216558..27219386-chr5:27248075..27249741,2	K562	blood:
7	chr5:27142169..27144167-chr5:27216401..27218776,2	K562	blood:
8	chr5:27208394..27210780-chr5:27216486..27219339,3	K562	blood:
9	chr5:27191511..27196755-chr5:27216408..27219751,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000250337	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs4429813	0.82[ASN][1000 genomes]
rs4496679	0.82[ASN][1000 genomes]
rs4518345	0.82[ASN][1000 genomes]
rs4627957	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4640754	0.82[ASN][1000 genomes]
rs6895202	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72740675	0.82[ASN][1000 genomes]
rs72740677	0.82[ASN][1000 genomes]
rs72740681	0.82[ASN][1000 genomes]
rs72740682	0.82[ASN][1000 genomes]
rs72740683	0.82[ASN][1000 genomes]
rs72740686	0.82[ASN][1000 genomes]
rs72740690	0.82[ASN][1000 genomes]
rs72740691	0.82[ASN][1000 genomes]
rs72742779	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7712184	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9687841	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917332	chr5:26620698-27232713	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv868856	chr5:26789778-27321390	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv881006	chr5:27010686-27231314	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3450425	chr5:27134073-27323407	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv881286	chr5:27135351-27770554	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv880298	chr5:27193573-27659111	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv880326	chr5:27193573-27743375	Transcr. at gene 5' and 3' Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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