Variant report

Variant	rs4327332
Chromosome Location	chr3:23328242-23328243
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10510536	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11926494	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11927173	0.87[ASN][1000 genomes]
rs13094957	0.81[ASN][1000 genomes]
rs1495130	0.88[ASN][1000 genomes]
rs1496653	0.81[ASN][1000 genomes]
rs17012800	0.88[ASN][1000 genomes]
rs17012829	0.90[ASN][1000 genomes]
rs1845899	0.81[ASN][1000 genomes]
rs1908475	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2017065	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2173058	0.82[ASN][1000 genomes]
rs2359765	0.80[ASN][1000 genomes]
rs2359766	0.80[ASN][1000 genomes]
rs35352848	0.81[ASN][1000 genomes]
rs35901544	0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs56979234	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs57131555	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57625069	0.81[ASN][1000 genomes]
rs58724157	0.86[ASN][1000 genomes]
rs59687869	0.81[ASN][1000 genomes]
rs60782093	0.87[ASN][1000 genomes]
rs61578857	0.87[ASN][1000 genomes]
rs6765801	0.87[ASN][1000 genomes]
rs6769167	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6792370	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6808488	0.84[ASN][1000 genomes]
rs73823472	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7612463	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7612812	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7613185	0.81[ASN][1000 genomes]
rs7627380	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7627525	0.81[ASN][1000 genomes]
rs7628372	0.81[ASN][1000 genomes]
rs9866739	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9867046	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv589947	chr3:23277838-23403943	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv589948	chr3:23287141-23390221	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1004417	chr3:23318797-23389422	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23298800-23336600	Weak transcription	Thymus	Thymus
2	chr3:23314400-23330400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:23321000-23329800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr3:23321600-23332600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:23322600-23330800	Weak transcription	Aorta	Aorta
6	chr3:23325400-23330400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:23325400-23334000	Weak transcription	Left Ventricle	heart
8	chr3:23325600-23329600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:23325600-23330200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr3:23328000-23329200	ZNF genes & repeats	Primary B cells from cord blood	blood
11	chr3:23328000-23334200	Weak transcription	Pancreas	Pancrea

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