Variant report

Variant	rs4333428
Chromosome Location	chr6:150829362-150829363
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11961060	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4131416	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4131417	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4276514	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4282419	0.84[ASN][1000 genomes]
rs4304173	0.80[ASN][1000 genomes]
rs4311527	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4317421	0.84[ASN][1000 genomes]
rs4482992	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4555931	0.84[ASN][1000 genomes]
rs4605897	0.87[AMR][1000 genomes]
rs62432560	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62432561	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6557543	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6904218	0.83[ASN][1000 genomes]
rs6911586	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6913362	0.89[ASN][1000 genomes]
rs6918187	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6919129	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6925854	0.81[ASN][1000 genomes]
rs7341223	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7341280	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7453224	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7749721	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7756438	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7766048	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7767400	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7773743	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7775952	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9322262	0.90[ASN][1000 genomes]
rs9322263	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9322265	0.82[ASN][1000 genomes]
rs9371454	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9371455	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9372056	0.92[ASN][1000 genomes]
rs9372071	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9383828	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9383830	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9384547	0.90[ASN][1000 genomes]
rs9384548	0.89[ASN][1000 genomes]
rs9384550	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9384556	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9397324	0.92[ASN][1000 genomes]
rs9397325	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9397326	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9397328	0.83[ASN][1000 genomes]
rs9397333	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9398011	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9398014	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9398015	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9398016	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9480467	0.84[ASN][1000 genomes]
rs9480469	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9480470	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9480471	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9480472	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150825000-150830800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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