Variant report

Variant	rs4333850
Chromosome Location	chr1:152233718-152233719
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10749672	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10788829	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10888469	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10888474	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11204940	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11204950	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1466758	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1532400	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2036101	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs3120648	0.85[AFR][1000 genomes]
rs3126057	0.83[AFR][1000 genomes]
rs3126064	0.83[AFR][1000 genomes]
rs4548447	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6587655	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7523354	0.91[AFR][1000 genomes]
rs7533656	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7534986	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7550091	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv547853	chr1:152008671-152236760	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv1014095	chr1:152104486-152454591	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv946325	chr1:152221751-152240196	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS	lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3372510	chr1:152232828-152237226	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152230400-152235800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:152231200-152236400	Weak transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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