Variant report

Variant	rs4334099
Chromosome Location	chr12:40115354-40115355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10083196	1.00[CEU][hapmap]
rs10444571	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs10444572	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs10747879	1.00[ASN][1000 genomes]
rs10784058	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11833798	1.00[CEU][hapmap]
rs11834460	1.00[ASN][1000 genomes]
rs4238071	1.00[CEU][hapmap]
rs4238074	1.00[ASN][1000 genomes]
rs4238075	1.00[ASN][1000 genomes]
rs4238077	0.82[CEU][hapmap];1.00[ASN][1000 genomes]
rs4238078	1.00[CEU][hapmap]
rs4267135	1.00[AFR][1000 genomes]
rs4268570	1.00[CEU][hapmap]
rs4321021	1.00[AFR][1000 genomes]
rs4322462	1.00[ASN][1000 genomes]
rs4334097	1.00[ASN][1000 genomes]
rs4334098	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4374002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4391873	1.00[ASN][1000 genomes]
rs4397917	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4399379	1.00[CEU][hapmap]
rs4427625	1.00[CEU][hapmap]
rs4435073	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4441086	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4447240	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4450227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4511345	1.00[ASN][1000 genomes]
rs4529945	1.00[ASN][1000 genomes]
rs4533100	1.00[ASN][1000 genomes]
rs4544077	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4583047	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs4611277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4639999	1.00[CEU][hapmap]
rs4767953	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs4768173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768175	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768176	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768178	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4768180	1.00[ASN][1000 genomes]
rs4768181	1.00[CEU][hapmap]
rs4768182	1.00[CEU][hapmap]
rs56122050	1.00[ASN][1000 genomes]
rs6581321	1.00[ASN][1000 genomes]
rs6581325	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs6581326	1.00[ASN][1000 genomes]
rs6581336	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs6581337	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6581338	1.00[CEU][hapmap]
rs6581346	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7133037	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7135021	1.00[ASN][1000 genomes]
rs7135047	1.00[ASN][1000 genomes]
rs7297063	1.00[ASN][1000 genomes]
rs7299595	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7300946	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7302571	1.00[ASN][1000 genomes]
rs7303581	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7310917	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7956254	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7961216	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7967287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7967347	1.00[ASN][1000 genomes]
rs7969296	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs7973782	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7975209	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs9645805	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531527	chr12:39680812-40182822	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1037457	chr12:39898349-40245401	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv541480	chr12:39898349-40245401	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv899015	chr12:39946354-40118249	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv899024	chr12:40046408-40188870	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv1053603	chr12:40082673-40197609	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40113200-40116600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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