Variant report
| Variant | rs4345360 |
|---|---|
| Chromosome Location | chr5:144985237-144985238 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10036664 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10040204 | 1.00[AMR][1000 genomes] |
| rs10043538 | 1.00[AMR][1000 genomes] |
| rs10043961 | 1.00[AMR][1000 genomes] |
| rs10052024 | 1.00[AMR][1000 genomes] |
| rs10052169 | 1.00[AMR][1000 genomes] |
| rs10054314 | 1.00[AMR][1000 genomes] |
| rs10073313 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10077242 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10476875 | 1.00[AMR][1000 genomes] |
| rs13354398 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13356403 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13436791 | 1.00[AMR][1000 genomes] |
| rs13436850 | 1.00[AMR][1000 genomes] |
| rs2217647 | 1.00[AMR][1000 genomes] |
| rs28507009 | 1.00[AMR][1000 genomes] |
| rs34207413 | 1.00[EUR][1000 genomes] |
| rs55695946 | 1.00[EUR][1000 genomes] |
| rs57017606 | 1.00[EUR][1000 genomes] |
| rs57301309 | 1.00[EUR][1000 genomes] |
| rs57342170 | 1.00[EUR][1000 genomes] |
| rs57791987 | 1.00[EUR][1000 genomes] |
| rs58878643 | 1.00[EUR][1000 genomes] |
| rs60380240 | 1.00[EUR][1000 genomes] |
| rs73302023 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73311522 | 1.00[EUR][1000 genomes] |
| rs73311531 | 1.00[EUR][1000 genomes] |
| rs73311568 | 1.00[EUR][1000 genomes] |
| rs73311570 | 1.00[EUR][1000 genomes] |
| rs73311572 | 1.00[EUR][1000 genomes] |
| rs868778 | 1.00[AMR][1000 genomes] |
| rs9285664 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv883004 | chr5:144945649-145068001 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv883005 | chr5:144945649-145107586 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:144968000-144989200 | Weak transcription | Aorta | Aorta |
| 2 | chr5:144979200-144989200 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
