Variant report

Variant	rs4345958
Chromosome Location	chr11:10320661-10320662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CHD1	chr11:10319913-10320691	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10315206..10317508-chr11:10317757..10321006,5	K562	blood:
2	chr11:10314545..10316580-chr11:10320392..10322292,3	K562	blood:

Variant related genes	Relation type
SBF2	TF binding region
ENSG00000133812	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10770103	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042627	1.00[ASN][1000 genomes]
rs11042731	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11599958	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603561	0.90[EUR][1000 genomes]
rs12362938	1.00[ASN][1000 genomes]
rs12416695	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416875	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12418212	1.00[ASN][1000 genomes]
rs12418514	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420122	0.81[EUR][1000 genomes]
rs12420640	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2044782	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2167169	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4271380	0.81[EUR][1000 genomes]
rs4450168	1.00[ASN][1000 genomes]
rs4910098	1.00[ASN][1000 genomes]
rs55788918	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55796222	0.81[EUR][1000 genomes]
rs55923001	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878636	1.00[ASN][1000 genomes]
rs61889838	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891765	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104093	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931804	1.00[ASN][1000 genomes]
rs7950447	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10316600-10322000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:10316600-10323800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:10316600-10323800	Weak transcription	Left Ventricle	heart
4	chr11:10316600-10323800	Weak transcription	Ovary	ovary
5	chr11:10316600-10323800	Weak transcription	Right Ventricle	heart
6	chr11:10316600-10324000	Weak transcription	Lung	lung
7	chr11:10316800-10322600	Weak transcription	Fetal Kidney	kidney
8	chr11:10316800-10323200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:10317000-10323200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:10317000-10323400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:10317000-10323600	Weak transcription	Adipose Nuclei	Adipose
12	chr11:10317000-10323600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr11:10317000-10323800	Weak transcription	Colonic Mucosa	Colon
14	chr11:10317000-10323800	Weak transcription	Placenta	Placenta
15	chr11:10317000-10323800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr11:10317200-10321000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:10317200-10322400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr11:10317200-10323000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:10317200-10323800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr11:10317200-10323800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr11:10317400-10322200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr11:10317400-10322600	Weak transcription	HepG2	liver
23	chr11:10317400-10323200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:10317400-10323600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr11:10317600-10321200	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr11:10317600-10322200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr11:10317600-10322600	Weak transcription	Hela-S3	cervix
28	chr11:10317600-10322800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr11:10317600-10322800	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr11:10317600-10323400	Weak transcription	Fetal Intestine Small	intestine
31	chr11:10317800-10321000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr11:10317800-10323200	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr11:10317800-10323400	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr11:10317800-10323600	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr11:10318200-10322000	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:10319200-10321400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr11:10319400-10320800	Enhancers	NHLF	lung
38	chr11:10319400-10321000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr11:10319400-10322000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr11:10319400-10322200	Genic enhancers	NHDF-Ad	bronchial
41	chr11:10319600-10321000	Enhancers	GM12878-XiMat	blood
42	chr11:10319600-10323200	Weak transcription	Fetal Intestine Large	intestine
43	chr11:10319600-10323400	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr11:10319600-10323600	Weak transcription	HUVEC	blood vessel
45	chr11:10319800-10323800	Weak transcription	Fetal Heart	heart
46	chr11:10320000-10321000	Strong transcription	A549	lung
47	chr11:10320200-10324000	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr11:10320400-10321000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr11:10320400-10321000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr11:10320400-10322000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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