Variant report

Variant	rs4348086
Chromosome Location	chr4:86811955-86811956
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1027942	0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11097082	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs13121761	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1510580	0.82[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs346509	0.94[YRI][hapmap]
rs346516	0.94[YRI][hapmap]
rs4326006	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6531876	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6531877	0.94[ASN][1000 genomes]
rs7664621	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7685851	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7692633	0.94[ASN][1000 genomes]
rs7692989	0.94[ASN][1000 genomes]
rs9307011	0.96[ASN][1000 genomes]
rs958887	0.84[YRI][hapmap]
rs9790433	0.94[ASN][1000 genomes]
rs9790515	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879519	chr4:86786204-86871282	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2753470	chr4:86804078-86844350	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86788000-86812400	Weak transcription	HSMM	muscle
2	chr4:86788200-86812000	Weak transcription	Fetal Muscle Leg	muscle
3	chr4:86790800-86835400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:86791200-86844400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:86808200-86846000	Weak transcription	HUVEC	blood vessel
6	chr4:86810800-86812000	Enhancers	Stomach Mucosa	stomach
7	chr4:86810800-86812200	Enhancers	Primary B cells from peripheral blood	blood
8	chr4:86811200-86822800	Weak transcription	Primary B cells from cord blood	blood
9	chr4:86811600-86812200	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr4:86811600-86812400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:86811800-86812000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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