Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56179482..56180209-chr6:56435647..56436284,2	MCF-7	breast:
2	chr6:56178358..56181884-chr6:56184796..56186667,3	K562	blood:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10733186	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10755782	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10755783	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10807514	1.00[AMR][1000 genomes]
rs10948998	1.00[AMR][1000 genomes]
rs3846930	0.82[YRI][hapmap]
rs3996938	0.82[YRI][hapmap]
rs4266497	1.00[AMR][1000 genomes]
rs4282413	1.00[AMR][1000 genomes]
rs4288206	1.00[AMR][1000 genomes]
rs4360138	1.00[YRI][hapmap]
rs4374815	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs4385303	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs4388289	1.00[AMR][1000 genomes]
rs4626424	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs4715601	0.82[YRI][hapmap]
rs5002552	1.00[AMR][1000 genomes]
rs6910756	1.00[AMR][1000 genomes]
rs6915844	1.00[AMR][1000 genomes]
rs6933632	1.00[AMR][1000 genomes]
rs73448977	1.00[AMR][1000 genomes]
rs73747783	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7775020	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7775317	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7775403	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475673	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56174600-56180000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:56177800-56179800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:56178400-56179800	Weak transcription	Colon Smooth Muscle	Colon

Quick Search: