Variant report

Variant	rs435524
Chromosome Location	chr5:116927268-116927269
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs166494	0.91[EUR][1000 genomes]
rs174740	0.83[EUR][1000 genomes]
rs2036577	0.87[EUR][1000 genomes]
rs2451229	0.91[EUR][1000 genomes]
rs2657043	0.86[EUR][1000 genomes]
rs265862	0.85[EUR][1000 genomes]
rs267073	0.90[EUR][1000 genomes]
rs267074	0.86[EUR][1000 genomes]
rs267077	0.89[EUR][1000 genomes]
rs267078	0.91[EUR][1000 genomes]
rs365600	0.85[EUR][1000 genomes]
rs366335	0.80[EUR][1000 genomes]
rs374057	0.85[EUR][1000 genomes]
rs378387	0.85[EUR][1000 genomes]
rs382548	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs386139	0.85[EUR][1000 genomes]
rs3862062	0.87[EUR][1000 genomes]
rs387069	0.86[EUR][1000 genomes]
rs388253	0.83[EUR][1000 genomes]
rs388643	0.86[EUR][1000 genomes]
rs390818	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs398793	0.86[EUR][1000 genomes]
rs400845	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs401607	0.85[EUR][1000 genomes]
rs402131	0.85[EUR][1000 genomes]
rs402578	0.86[EUR][1000 genomes]
rs408218	0.85[EUR][1000 genomes]
rs411705	0.91[EUR][1000 genomes]
rs412087	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs431360	0.90[EUR][1000 genomes]
rs435028	0.91[EUR][1000 genomes]
rs441635	0.90[EUR][1000 genomes]
rs445048	0.86[EUR][1000 genomes]
rs448217	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs584659	0.87[EUR][1000 genomes]
rs612365	0.91[EUR][1000 genomes]
rs636060	0.90[EUR][1000 genomes]
rs6899129	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882757	chr5:116810010-117042759	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830458	chr5:116831747-117003041	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1016664	chr5:116888074-117181273	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1019332	chr5:116888074-117248632	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3379641	chr5:116926253-116928501	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116924000-116929200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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