Variant report

Variant	rs436090
Chromosome Location	chr7:101797486-101797487
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101797026..101799791-chr7:101807613..101809594,2	K562	blood:
2	chr7:101792126..101793850-chr7:101795352..101798299,2	MCF-7	breast:
3	chr7:101796852..101799791-chr7:101806460..101809291,3	K562	blood:
4	chr7:101793047..101795642-chr7:101797435..101799697,2	K562	blood:
5	chr7:101791487..101793920-chr7:101795283..101798105,2	K562	blood:
6	chr7:101789603..101792075-chr7:101795713..101797542,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10263474	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs104933	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11972888	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11973970	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11977667	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11982785	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16869529	0.86[AMR][1000 genomes]
rs17135027	0.95[AMR][1000 genomes]
rs17135076	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs1734614	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2051962	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2529097	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34746794	0.98[EUR][1000 genomes]
rs364466	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs365397	1.00[CHB][hapmap]
rs375417	1.00[CHB][hapmap]
rs380967	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs381145	1.00[CHB][hapmap]
rs388592	0.98[EUR][1000 genomes]
rs389224	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs392286	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs396162	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs397479	0.98[EUR][1000 genomes]
rs411030	0.98[EUR][1000 genomes]
rs424941	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs442030	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs446513	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57673817	0.88[EUR][1000 genomes]
rs59476027	0.88[EUR][1000 genomes]
rs59822540	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6954742	0.88[EUR][1000 genomes]
rs6969463	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408028	0.86[AMR][1000 genomes]
rs73408058	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408093	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408094	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412026	0.88[EUR][1000 genomes]
rs73412034	0.88[EUR][1000 genomes]
rs73412036	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73412046	0.86[AMR][1000 genomes]
rs965863	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101765200-101801200	Weak transcription	Pancreas	Pancrea
2	chr7:101765600-101801000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr7:101772000-101801600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:101773600-101801200	Weak transcription	Aorta	Aorta
5	chr7:101774200-101801200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr7:101777400-101812800	Weak transcription	Fetal Lung	lung
7	chr7:101778400-101812000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:101782000-101797600	Weak transcription	Fetal Brain Female	brain
9	chr7:101782800-101803400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:101784800-101801400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr7:101784800-101801600	Weak transcription	Adipose Nuclei	Adipose
12	chr7:101784800-101814400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr7:101784800-101821600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr7:101784800-101822600	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr7:101788800-101801200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:101789800-101812800	Weak transcription	Brain Angular Gyrus	brain
17	chr7:101790600-101811400	Weak transcription	Brain Substantia Nigra	brain
18	chr7:101790800-101806600	Weak transcription	Psoas Muscle	Psoas
19	chr7:101790800-101811800	Weak transcription	Osteobl	bone
20	chr7:101790800-101812600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr7:101791000-101801800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr7:101791000-101812000	Weak transcription	Brain Hippocampus Middle	brain
23	chr7:101793200-101806600	Weak transcription	Colonic Mucosa	Colon
24	chr7:101793800-101812600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr7:101794400-101799800	Enhancers	Placenta	Placenta
26	chr7:101794600-101798200	Weak transcription	K562	blood
27	chr7:101794800-101816800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr7:101795400-101797600	Strong transcription	Primary T cells from cord blood	blood
29	chr7:101795400-101797600	Strong transcription	Dnd41	blood
30	chr7:101796000-101797600	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr7:101796000-101797600	Strong transcription	Primary B cells from cord blood	blood
32	chr7:101796000-101797600	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr7:101796000-101797800	Enhancers	Fetal Muscle Trunk	muscle
34	chr7:101796000-101810800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr7:101796200-101798400	Strong transcription	Fetal Stomach	stomach
36	chr7:101796400-101797600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr7:101796400-101802000	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr7:101796800-101801200	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr7:101797000-101801200	Weak transcription	Esophagus	oesophagus
40	chr7:101797000-101801600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr7:101797000-101802000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr7:101797000-101806000	Weak transcription	Spleen	Spleen
43	chr7:101797000-101814200	Weak transcription	Hela-S3	cervix
44	chr7:101797200-101797800	Enhancers	NHEK	skin
45	chr7:101797200-101798400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr7:101797200-101798400	Strong transcription	Fetal Thymus	thymus
47	chr7:101797200-101798800	Enhancers	HepG2	liver
48	chr7:101797200-101799400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr7:101797200-101799400	Enhancers	Fetal Intestine Small	intestine
50	chr7:101797200-101799600	Weak transcription	Right Atrium	heart

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