Variant report

Variant	rs436287
Chromosome Location	chr7:101797609-101797610
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101797026..101799791-chr7:101807613..101809594,2	K562	blood:
2	chr7:101792126..101793850-chr7:101795352..101798299,2	MCF-7	breast:
3	chr7:101796852..101799791-chr7:101806460..101809291,3	K562	blood:
4	chr7:101793047..101795642-chr7:101797435..101799697,2	K562	blood:
5	chr7:101791487..101793920-chr7:101795283..101798105,2	K562	blood:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10953358	0.82[EUR][1000 genomes]
rs1637257	0.82[EUR][1000 genomes]
rs169307	0.92[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1734879	0.82[EUR][1000 genomes]
rs1902	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs201435	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs201436	0.82[EUR][1000 genomes]
rs201438	0.81[EUR][1000 genomes]
rs201440	0.81[EUR][1000 genomes]
rs201441	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs201442	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs201443	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs201445	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs201446	0.81[EUR][1000 genomes]
rs201447	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs201448	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs201449	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs201450	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs201451	0.82[EUR][1000 genomes]
rs201452	0.82[EUR][1000 genomes]
rs201453	0.82[EUR][1000 genomes]
rs201454	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs201455	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs201456	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs201457	0.82[EUR][1000 genomes]
rs201458	0.82[EUR][1000 genomes]
rs201459	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs201461	0.82[EUR][1000 genomes]
rs201468	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs201469	0.92[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs201470	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs201471	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs201472	0.91[EUR][1000 genomes]
rs201475	0.92[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs201477	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs201478	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201480	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201481	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201482	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201485	0.89[EUR][1000 genomes]
rs201486	0.89[EUR][1000 genomes]
rs201489	0.92[EUR][1000 genomes]
rs201490	0.92[CEU][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes]
rs201492	0.93[EUR][1000 genomes]
rs201493	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs201497	0.94[EUR][1000 genomes]
rs201498	0.92[CEU][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes]
rs201500	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201502	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201503	0.92[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201504	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201505	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201507	0.94[EUR][1000 genomes]
rs201508	0.94[EUR][1000 genomes]
rs201509	0.92[CEU][hapmap];0.82[JPT][hapmap];0.94[EUR][1000 genomes]
rs201511	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs201522	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201526	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs201527	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs201529	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2529095	0.91[EUR][1000 genomes]
rs2734782	0.90[EUR][1000 genomes]
rs34247954	0.82[EUR][1000 genomes]
rs367333	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs380175	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs382228	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs411354	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs417013	0.88[CEU][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs436709	0.81[EUR][1000 genomes]
rs443963	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs448591	0.80[EUR][1000 genomes]
rs4729776	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6465851	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6950791	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6970800	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101765200-101801200	Weak transcription	Pancreas	Pancrea
2	chr7:101765600-101801000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr7:101772000-101801600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:101773600-101801200	Weak transcription	Aorta	Aorta
5	chr7:101774200-101801200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr7:101777400-101812800	Weak transcription	Fetal Lung	lung
7	chr7:101778400-101812000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:101782800-101803400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:101784800-101801400	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr7:101784800-101801600	Weak transcription	Adipose Nuclei	Adipose
11	chr7:101784800-101814400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr7:101784800-101821600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr7:101784800-101822600	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr7:101788800-101801200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr7:101789800-101812800	Weak transcription	Brain Angular Gyrus	brain
16	chr7:101790600-101811400	Weak transcription	Brain Substantia Nigra	brain
17	chr7:101790800-101806600	Weak transcription	Psoas Muscle	Psoas
18	chr7:101790800-101811800	Weak transcription	Osteobl	bone
19	chr7:101790800-101812600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr7:101791000-101801800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr7:101791000-101812000	Weak transcription	Brain Hippocampus Middle	brain
22	chr7:101793200-101806600	Weak transcription	Colonic Mucosa	Colon
23	chr7:101793800-101812600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr7:101794400-101799800	Enhancers	Placenta	Placenta
25	chr7:101794600-101798200	Weak transcription	K562	blood
26	chr7:101794800-101816800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr7:101796000-101797800	Enhancers	Fetal Muscle Trunk	muscle
28	chr7:101796000-101810800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr7:101796200-101798400	Strong transcription	Fetal Stomach	stomach
30	chr7:101796400-101802000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr7:101796800-101801200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr7:101797000-101801200	Weak transcription	Esophagus	oesophagus
33	chr7:101797000-101801600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr7:101797000-101802000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr7:101797000-101806000	Weak transcription	Spleen	Spleen
36	chr7:101797000-101814200	Weak transcription	Hela-S3	cervix
37	chr7:101797200-101797800	Enhancers	NHEK	skin
38	chr7:101797200-101798400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr7:101797200-101798400	Strong transcription	Fetal Thymus	thymus
40	chr7:101797200-101798800	Enhancers	HepG2	liver
41	chr7:101797200-101799400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr7:101797200-101799400	Enhancers	Fetal Intestine Small	intestine
43	chr7:101797200-101799600	Weak transcription	Right Atrium	heart
44	chr7:101797200-101799600	Weak transcription	Right Ventricle	heart
45	chr7:101797200-101800600	Enhancers	Fetal Intestine Large	intestine
46	chr7:101797200-101801000	Weak transcription	Gastric	stomach
47	chr7:101797200-101801200	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr7:101797200-101801200	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr7:101797200-101801200	Weak transcription	Primary B cells from peripheral blood	blood
50	chr7:101797200-101801200	Weak transcription	Primary T helper cells fromperipheralblood	blood

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