Variant report

Variant	rs4367471
Chromosome Location	chr7:104382873-104382874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10487220	1.00[ASW][hapmap]
rs10953448	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10953449	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10953450	0.90[MEX][hapmap]
rs11561986	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11974563	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12667073	1.00[ASW][hapmap]
rs12669007	0.86[CHB][hapmap];0.81[MEX][hapmap]
rs12671142	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12672491	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12674283	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12674286	0.86[MEX][hapmap]
rs17491234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17568789	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35494057	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3923945	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4132013	0.86[CHB][hapmap];0.90[MEX][hapmap]
rs73713435	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429790	chr7:104314049-104488049	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4367471	ATXN7L1	cis	parietal	SCAN
rs4367471	TFR2	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104377400-104384400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:104378600-104385200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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