Variant report

Variant	rs436907
Chromosome Location	chr5:178013798-178013799
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs262022	1.00[AMR][1000 genomes]
rs262025	1.00[AMR][1000 genomes]
rs262026	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs262031	1.00[AMR][1000 genomes]
rs262032	1.00[AMR][1000 genomes]
rs262034	1.00[AMR][1000 genomes]
rs262035	1.00[AMR][1000 genomes]
rs262043	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs262046	1.00[AMR][1000 genomes]
rs262049	1.00[AMR][1000 genomes]
rs262050	1.00[AMR][1000 genomes]
rs262058	1.00[AMR][1000 genomes]
rs6867990	1.00[AMR][1000 genomes]
rs6873445	1.00[AMR][1000 genomes]
rs73350300	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases
3	nsv883214	chr5:177876309-178047217	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1031666	chr5:177988601-178236068	Bivalent/Poised TSS Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv883216	chr5:178002325-178025087	Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3425883	chr5:178010406-178014606	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178012800-178013800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:178012800-178013800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:178012800-178013800	Weak transcription	Osteobl	bone
4	chr5:178012800-178014200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:178012800-178014400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:178012800-178014800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:178012800-178014800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:178012800-178014800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr5:178012800-178014800	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr5:178012800-178015000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr5:178012800-178015000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:178012800-178015000	Enhancers	Fetal Stomach	stomach
13	chr5:178012800-178015000	Weak transcription	Lung	lung
14	chr5:178012800-178016600	Weak transcription	Right Atrium	heart
15	chr5:178012800-178016800	Weak transcription	Gastric	stomach
16	chr5:178013200-178014600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr5:178013200-178015600	Bivalent Enhancer	Fetal Lung	lung
18	chr5:178013200-178016000	Weak transcription	Pancreas	Pancrea
19	chr5:178013400-178014400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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