Variant report

Variant	rs437060
Chromosome Location	chr7:101862968-101862969
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10270614	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1108056	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11540899	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12537077	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs368058	0.81[ASN][1000 genomes]
rs369547	0.83[ASN][1000 genomes]
rs372968	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs375445	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs382947	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs385417	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs402529	0.83[ASN][1000 genomes]
rs407943	0.81[ASN][1000 genomes]
rs408425	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs409224	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs410697	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs41275218	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs420920	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs426954	0.82[ASN][1000 genomes]
rs427941	0.80[ASN][1000 genomes]
rs434624	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs445646	0.82[ASN][1000 genomes]
rs448665	0.81[ASN][1000 genomes]
rs448775	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs449806	0.87[ASN][1000 genomes]
rs56077916	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56235745	0.88[EUR][1000 genomes]
rs60987662	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67531258	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6976947	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7801220	0.87[CEU][hapmap]
rs7801259	0.89[CEU][hapmap]

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101801200-101864000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr7:101808400-101868400	Strong transcription	Thymus	Thymus
3	chr7:101812600-101863200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:101812600-101867000	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr7:101812600-101867000	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr7:101814000-101863600	Weak transcription	HUVEC	blood vessel
7	chr7:101824400-101863400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:101829400-101870800	Weak transcription	Small Intestine	intestine
9	chr7:101832200-101863200	Strong transcription	Dnd41	blood
10	chr7:101832400-101864000	Strong transcription	Fetal Stomach	stomach
11	chr7:101832800-101864800	Strong transcription	Primary T cells from cord blood	blood
12	chr7:101838400-101889400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:101840600-101863800	Weak transcription	NH-A	brain
14	chr7:101841200-101863800	Weak transcription	HSMM	muscle
15	chr7:101846000-101904200	Weak transcription	Stomach Mucosa	stomach
16	chr7:101847000-101877200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr7:101848800-101872000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr7:101849000-101863600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr7:101849200-101864400	Weak transcription	NHLF	lung
20	chr7:101849200-101870400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr7:101849400-101870600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr7:101849600-101870600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr7:101849600-101875600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr7:101849800-101863800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr7:101849800-101871400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr7:101849800-101877400	Weak transcription	Hela-S3	cervix
27	chr7:101850600-101863800	Weak transcription	HSMMtube	muscle
28	chr7:101852200-101870400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr7:101852400-101893600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr7:101852600-101870600	Weak transcription	Aorta	Aorta
31	chr7:101852600-101872000	Weak transcription	Brain Anterior Caudate	brain
32	chr7:101852800-101870600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr7:101852800-101897000	Weak transcription	NHEK	skin
34	chr7:101854000-101863400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr7:101854200-101864200	Weak transcription	Osteobl	bone
36	chr7:101854200-101870600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr7:101854200-101871000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr7:101854400-101864400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr7:101854400-101870200	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr7:101854400-101870600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr7:101854400-101870800	Weak transcription	Brain Hippocampus Middle	brain
42	chr7:101854400-101871200	Weak transcription	Brain Angular Gyrus	brain
43	chr7:101854400-101871800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr7:101854400-101879800	Weak transcription	Brain Substantia Nigra	brain
45	chr7:101854400-101894800	Weak transcription	K562	blood
46	chr7:101854600-101870800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr7:101854600-101871400	Weak transcription	HepG2	liver
48	chr7:101854600-101879600	Strong transcription	Fetal Intestine Small	intestine
49	chr7:101855400-101871600	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr7:101855600-101864200	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links