Variant report

Variant	rs4370997
Chromosome Location	chr12:86895767-86895768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10431399	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs10735250	0.87[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10745415	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs10745416	0.89[CHB][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap];0.81[ASN][1000 genomes]
rs10745419	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs10776969	0.85[JPT][hapmap];0.87[YRI][hapmap]
rs10776971	0.83[CHB][hapmap]
rs10776977	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs10858415	0.94[JPT][hapmap]
rs10858425	0.83[CHB][hapmap];0.84[JPT][hapmap];0.86[YRI][hapmap]
rs10858427	0.84[CHB][hapmap];0.85[JPT][hapmap];0.84[YRI][hapmap]
rs10858428	0.87[YRI][hapmap]
rs10858429	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs10858436	0.84[YRI][hapmap]
rs10858444	0.87[YRI][hapmap]
rs11103930	0.94[JPT][hapmap]
rs11103983	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs11830208	0.94[JPT][hapmap]
rs12303046	0.94[JPT][hapmap]
rs12317113	0.83[CHB][hapmap];0.84[JPT][hapmap];0.86[YRI][hapmap]
rs12319410	0.83[JPT][hapmap]
rs12319593	0.81[JPT][hapmap]
rs12578669	0.84[CHB][hapmap];0.85[JPT][hapmap];0.81[YRI][hapmap]
rs12579580	0.83[JPT][hapmap]
rs12581639	0.83[JPT][hapmap]
rs12582767	0.84[JPT][hapmap]
rs17013981	0.84[JPT][hapmap]
rs17014005	0.84[JPT][hapmap]
rs17014008	0.84[JPT][hapmap]
rs17014009	0.84[JPT][hapmap]
rs17014020	0.84[JPT][hapmap]
rs17014026	0.83[JPT][hapmap]
rs1922742	0.84[CHB][hapmap];0.84[JPT][hapmap];0.87[YRI][hapmap]
rs1922745	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs1922749	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs1955399	0.84[CHB][hapmap];0.90[YRI][hapmap];0.81[ASN][1000 genomes]
rs1986602	0.84[JPT][hapmap]
rs1986603	0.84[JPT][hapmap]
rs2091818	0.84[JPT][hapmap]
rs2405793	0.80[JPT][hapmap]
rs2405923	0.86[YRI][hapmap]
rs2405929	0.83[JPT][hapmap]
rs2405930	0.83[JPT][hapmap]
rs2405931	0.94[JPT][hapmap]
rs2406142	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs2406156	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs2406159	0.92[CEU][hapmap]
rs2406160	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2897240	0.84[JPT][hapmap]
rs2897274	0.83[JPT][hapmap]
rs2897275	0.94[JPT][hapmap]
rs2897277	0.94[JPT][hapmap]
rs2897278	0.94[JPT][hapmap]
rs4300451	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs4351884	0.93[CEU][hapmap]
rs4399378	0.84[YRI][hapmap]
rs4488269	0.84[JPT][hapmap]
rs4526834	0.94[JPT][hapmap]
rs4612887	0.93[CEU][hapmap]
rs4636736	0.83[JPT][hapmap]
rs4842512	0.86[EUR][1000 genomes]
rs4842819	0.87[YRI][hapmap]
rs6538042	0.83[CHB][hapmap];0.84[JPT][hapmap];0.90[YRI][hapmap]
rs6538043	0.88[EUR][1000 genomes]
rs6538044	0.89[EUR][1000 genomes]
rs6538046	0.86[YRI][hapmap]
rs7139324	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs7297574	0.90[YRI][hapmap]
rs7299319	0.90[YRI][hapmap]
rs7301129	0.84[JPT][hapmap]
rs7302391	0.92[CEU][hapmap]
rs7303796	0.84[CHB][hapmap];0.85[JPT][hapmap];0.97[YRI][hapmap]
rs7316265	0.87[EUR][1000 genomes]
rs7954883	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs7961251	0.83[JPT][hapmap]
rs7963659	0.83[CHB][hapmap];0.84[JPT][hapmap];0.93[YRI][hapmap]
rs7967529	0.93[CEU][hapmap]
rs7973543	0.87[CEU][hapmap];0.93[YRI][hapmap]
rs7977689	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs7980126	0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899395	chr12:86813367-87177972	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv899396	chr12:86863041-87276957	ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv899397	chr12:86863041-87636831	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv899398	chr12:86880442-87051310	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv899399	chr12:86880442-87177972	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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