Variant report

Variant	rs4372406
Chromosome Location	chr11:93567889-93567890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs16919376	1.00[EUR][1000 genomes]
rs16919379	1.00[EUR][1000 genomes]
rs16919383	1.00[EUR][1000 genomes]
rs16919384	1.00[EUR][1000 genomes]
rs16919386	1.00[EUR][1000 genomes]
rs16919387	1.00[EUR][1000 genomes]
rs16919390	1.00[EUR][1000 genomes]
rs16919393	1.00[EUR][1000 genomes]
rs16919410	1.00[EUR][1000 genomes]
rs16919416	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16919459	1.00[EUR][1000 genomes]
rs2212995	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2226872	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34028557	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34298528	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34298809	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34631197	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35454774	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35642511	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35646601	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56893874	1.00[EUR][1000 genomes]
rs57340156	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61628694	1.00[EUR][1000 genomes]
rs7103189	1.00[EUR][1000 genomes]
rs7108692	1.00[EUR][1000 genomes]
rs7109799	1.00[EUR][1000 genomes]
rs7112202	1.00[EUR][1000 genomes]
rs7112720	1.00[EUR][1000 genomes]
rs7112990	1.00[EUR][1000 genomes]
rs7119915	1.00[EUR][1000 genomes]
rs7120747	1.00[EUR][1000 genomes]
rs7934848	1.00[EUR][1000 genomes]
rs7943111	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93565000-93575200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:93565400-93570400	Weak transcription	Stomach Mucosa	stomach
3	chr11:93565400-93575400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:93566200-93577000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:93567800-93575600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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