Variant report

Variant	rs4374001
Chromosome Location	chr12:86977367-86977368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10047529	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10047643	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10732640	0.93[EUR][1000 genomes]
rs10735253	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10745429	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11609178	0.80[ASN][1000 genomes]
rs11609218	0.80[ASN][1000 genomes]
rs11610166	0.83[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs11610247	0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs11610801	0.86[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs11613065	0.80[ASN][1000 genomes]
rs11614366	0.80[ASN][1000 genomes]
rs11830847	0.86[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs11835122	0.80[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs11836942	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs17014083	0.80[ASN][1000 genomes]
rs2217233	0.80[ASN][1000 genomes]
rs34603963	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs4359271	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4508266	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4508267	0.93[EUR][1000 genomes]
rs55860954	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs56948187	0.86[AFR][1000 genomes]
rs58920773	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs66926971	0.91[EUR][1000 genomes]
rs7308935	0.81[AFR][1000 genomes]
rs7957182	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899395	chr12:86813367-87177972	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv899396	chr12:86863041-87276957	ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv899397	chr12:86863041-87636831	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv899398	chr12:86880442-87051310	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv899399	chr12:86880442-87177972	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv559690	chr12:86929340-87020377	Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv916604	chr12:86966256-87275268	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1049580	chr12:86966497-87354132	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv976753	chr12:86968778-86977669	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86977000-86977400	Enhancers	Adipose Nuclei	Adipose

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