Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:110096767..110098879-chr8:110100924..110103388,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174417	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11785269	0.86[CHB][hapmap]
rs12544197	0.83[CHB][hapmap]
rs1548082	0.91[CHB][hapmap]
rs1548083	0.91[CHB][hapmap];0.81[CHD][hapmap]
rs16892486	0.86[CHB][hapmap];0.86[CHD][hapmap]
rs16892496	0.86[CHB][hapmap];0.86[CHD][hapmap]
rs2926198	0.91[CHB][hapmap]
rs2980603	0.91[CHB][hapmap]
rs2980618	0.85[CHB][hapmap];0.81[CHD][hapmap]
rs3134105	0.82[CHB][hapmap]
rs3925087	0.86[CHB][hapmap];0.86[CHD][hapmap]
rs4130682	0.86[CHB][hapmap]
rs4236801	0.86[CHB][hapmap];0.86[CHD][hapmap]
rs4446710	0.86[CHB][hapmap];0.86[CHD][hapmap]
rs4464939	0.86[CHB][hapmap]
rs4546626	0.86[CHB][hapmap];0.86[CHD][hapmap]
rs5772	0.82[JPT][hapmap]
rs7823804	0.86[CHB][hapmap]
rs7828207	0.86[CHB][hapmap]
rs7830607	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7832552	0.86[CHB][hapmap];0.86[CHD][hapmap]
rs7844643	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022273	chr8:110026712-110146600	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv539715	chr8:110026712-110146600	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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