Variant report

Variant	rs4389111
Chromosome Location	chr15:79122225-79122226
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16970187	1.00[JPT][hapmap]
rs16970254	1.00[JPT][hapmap]
rs4421942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4628927	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5029904	0.90[JPT][hapmap]
rs57920477	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5849	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904432	chr15:79066932-79175813	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79110800-79122600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:79118400-79123200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:79118400-79138400	Weak transcription	Right Atrium	heart
4	chr15:79118600-79123000	Weak transcription	Pancreas	Pancrea
5	chr15:79118600-79123000	Weak transcription	GM12878-XiMat	blood
6	chr15:79118600-79123200	Weak transcription	Liver	Liver
7	chr15:79118600-79123200	Weak transcription	Fetal Lung	lung
8	chr15:79118800-79128400	Weak transcription	Ovary	ovary
9	chr15:79121200-79122600	Enhancers	Spleen	Spleen
10	chr15:79121400-79123600	Weak transcription	Fetal Heart	heart
11	chr15:79121600-79123400	Weak transcription	Gastric	stomach
12	chr15:79121800-79122400	Weak transcription	Lung	lung
13	chr15:79121800-79122800	Weak transcription	Left Ventricle	heart
14	chr15:79121800-79123400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr15:79122000-79122400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr15:79122000-79122400	Weak transcription	Right Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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