Variant report

Variant	rs4389901
Chromosome Location	chr8:110871533-110871534
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10090049	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10096412	0.85[ASN][1000 genomes]
rs11997465	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12675834	0.80[AMR][1000 genomes]
rs12679278	0.86[ASN][1000 genomes]
rs1505650	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1505651	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1587943	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16880131	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16880142	0.85[ASN][1000 genomes]
rs16880145	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16880151	0.85[ASN][1000 genomes]
rs1809991	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2350411	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4585726	0.86[ASN][1000 genomes]
rs4735141	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4735142	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62527997	0.80[AMR][1000 genomes]
rs62528037	0.81[AMR][1000 genomes]
rs6469287	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7000312	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7013309	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7824024	0.80[AMR][1000 genomes]
rs7824730	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7833816	0.86[ASN][1000 genomes]
rs7834319	0.86[ASN][1000 genomes]
rs905962	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9773536	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033321	chr8:110826297-111131801	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1019284	chr8:110866196-111221890	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110871200-110877800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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