Variant report

Variant	rs439036
Chromosome Location	chr11:16890828-16890829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16885665..16888585-chr11:16888891..16892967,5	MCF-7	breast:
2	chr11:16888585..16890832-chr11:16900532..16902308,3	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10766354	0.90[ASN][1000 genomes]
rs10766355	0.92[ASN][1000 genomes]
rs10766356	0.92[ASN][1000 genomes]
rs10832695	0.92[ASN][1000 genomes]
rs177542	0.89[ASN][1000 genomes]
rs177543	0.90[ASN][1000 genomes]
rs2041236	0.92[ASN][1000 genomes]
rs365215	0.87[ASN][1000 genomes]
rs370161	0.96[ASN][1000 genomes]
rs373789	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs378755	0.92[ASN][1000 genomes]
rs379765	0.94[ASN][1000 genomes]
rs382734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs384735	0.94[ASN][1000 genomes]
rs385228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs392500	0.96[ASN][1000 genomes]
rs392509	0.96[ASN][1000 genomes]
rs402973	0.97[ASN][1000 genomes]
rs415300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs426144	0.94[ASN][1000 genomes]
rs428120	0.86[ASN][1000 genomes]
rs432373	0.94[ASN][1000 genomes]
rs433660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs442389	0.96[ASN][1000 genomes]
rs450954	0.96[ASN][1000 genomes]
rs55646909	0.82[ASN][1000 genomes]
rs7128212	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16863800-16892600	Weak transcription	Fetal Kidney	kidney
2	chr11:16872000-16895800	Weak transcription	Aorta	Aorta
3	chr11:16876800-16898600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr11:16877800-16892200	Weak transcription	Fetal Stomach	stomach
5	chr11:16877800-16899600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr11:16882400-16894800	Weak transcription	Pancreas	Pancrea
7	chr11:16882400-16895800	Weak transcription	Gastric	stomach
8	chr11:16882600-16898400	Weak transcription	Ovary	ovary
9	chr11:16884600-16897600	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:16884800-16897600	Weak transcription	Brain Anterior Caudate	brain
11	chr11:16884800-16900000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:16885000-16891600	Weak transcription	HSMM	muscle
13	chr11:16885000-16900200	Weak transcription	Stomach Mucosa	stomach
14	chr11:16885200-16891800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:16885200-16892400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:16885200-16894000	Weak transcription	Left Ventricle	heart
17	chr11:16885200-16894800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:16885200-16894800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:16885200-16902400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr11:16885400-16894800	Weak transcription	Right Ventricle	heart
21	chr11:16885400-16900800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:16885800-16891600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr11:16885800-16892000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr11:16885800-16892800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:16886200-16891400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr11:16886800-16893000	Strong transcription	Fetal Intestine Small	intestine
27	chr11:16887600-16892200	Strong transcription	Duodenum Mucosa	Duodenum
28	chr11:16888400-16891000	Strong transcription	Sigmoid Colon	Sigmoid Colon
29	chr11:16888800-16892200	Strong transcription	Liver	Liver
30	chr11:16888800-16892800	Genic enhancers	Fetal Heart	heart
31	chr11:16889200-16891800	Strong transcription	HepG2	liver
32	chr11:16889200-16892600	Weak transcription	HMEC	breast
33	chr11:16889400-16891000	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr11:16889600-16891000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr11:16889600-16891800	Strong transcription	Fetal Intestine Large	intestine
36	chr11:16889800-16891000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr11:16890000-16891000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr11:16890000-16891000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:16890000-16891000	Strong transcription	Lung	lung
40	chr11:16890000-16891200	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr11:16890000-16892000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr11:16890000-16892800	Strong transcription	Esophagus	oesophagus
43	chr11:16890200-16895600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr11:16890200-16897600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr11:16890400-16891600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr11:16890400-16891600	Weak transcription	Placenta	Placenta
47	chr11:16890400-16899000	Weak transcription	Adipose Nuclei	Adipose

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