Variant report

Variant	rs4390427
Chromosome Location	chr12:124372481-124372482
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:124368077..124370200-chr12:124371116..124373201,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10773041	0.92[ASN][1000 genomes]
rs10773046	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10773047	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10846562	0.81[ASN][1000 genomes]
rs10846564	0.92[ASN][1000 genomes]
rs10846566	0.81[EUR][1000 genomes]
rs10846567	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10846570	0.95[ASN][1000 genomes]
rs10846571	0.97[ASN][1000 genomes]
rs10846572	0.95[ASN][1000 genomes]
rs10846573	0.95[ASN][1000 genomes]
rs10846574	0.89[ASN][1000 genomes]
rs10846576	0.84[ASN][1000 genomes]
rs11057381	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11057383	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11057388	0.95[ASN][1000 genomes]
rs11057389	0.95[ASN][1000 genomes]
rs11057390	0.96[ASN][1000 genomes]
rs12228611	0.81[EUR][1000 genomes]
rs12306328	0.95[ASN][1000 genomes]
rs12307524	0.95[ASN][1000 genomes]
rs12309481	0.85[ASN][1000 genomes]
rs1317386	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1882489	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1922258	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2341569	0.81[ASN][1000 genomes]
rs2341779	0.92[ASN][1000 genomes]
rs28435362	0.84[ASN][1000 genomes]
rs28528904	0.84[ASN][1000 genomes]
rs28654550	0.84[ASN][1000 genomes]
rs34587940	0.84[ASN][1000 genomes]
rs4930727	0.90[ASN][1000 genomes]
rs57078519	0.85[ASN][1000 genomes]
rs57316347	0.85[ASN][1000 genomes]
rs58411567	0.84[ASN][1000 genomes]
rs61587964	0.84[ASN][1000 genomes]
rs6488905	0.80[ASN][1000 genomes]
rs6488907	0.91[ASN][1000 genomes]
rs6488910	0.84[ASN][1000 genomes]
rs7296123	0.95[ASN][1000 genomes]
rs7297429	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7300037	0.93[ASN][1000 genomes]
rs7303634	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7313897	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7314278	0.95[ASN][1000 genomes]
rs7314335	0.92[ASN][1000 genomes]
rs7959519	0.90[ASN][1000 genomes]
rs7964324	0.83[ASN][1000 genomes]
rs7970597	0.84[ASN][1000 genomes]
rs7976319	0.85[ASN][1000 genomes]
rs7977078	0.85[ASN][1000 genomes]
rs7978781	0.84[ASN][1000 genomes]
rs9669530	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498024	chr12:123994372-124459856	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124371800-124373200	Weak transcription	Fetal Brain Female	brain
2	chr12:124371800-124375000	Weak transcription	Fetal Thymus	thymus
3	chr12:124372000-124374000	Weak transcription	Gastric	stomach

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