Variant report

Variant	rs439136
Chromosome Location	chr10:55338240-55338241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10159501	0.81[EUR][1000 genomes]
rs10762996	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12256830	0.89[ASN][1000 genomes]
rs1387655	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1387659	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1489843	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1932010	0.90[EUR][1000 genomes]
rs1932011	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2050381	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2891482	0.89[ASN][1000 genomes]
rs386136	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs426872	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4271302	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs448075	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4935452	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56105712	0.89[ASN][1000 genomes]
rs6481024	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66643903	0.89[ASN][1000 genomes]
rs7098418	0.80[EUR][1000 genomes]
rs72791375	0.89[ASN][1000 genomes]
rs72791377	0.89[ASN][1000 genomes]
rs72791378	0.83[ASN][1000 genomes]
rs72791380	0.89[ASN][1000 genomes]
rs72791385	0.83[ASN][1000 genomes]
rs72791386	0.89[ASN][1000 genomes]
rs72791387	0.89[ASN][1000 genomes]
rs72791390	0.89[ASN][1000 genomes]
rs72791393	0.89[ASN][1000 genomes]
rs72791394	0.89[ASN][1000 genomes]
rs72793106	0.89[ASN][1000 genomes]
rs72793107	0.89[ASN][1000 genomes]
rs7904493	0.87[EUR][1000 genomes]
rs9416277	0.89[EUR][1000 genomes]
rs9416285	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1044282	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv540631	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1043501	chr10:55186701-55516253	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv540632	chr10:55186701-55516253	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1050323	chr10:55190079-55546575	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3432801	chr10:55338217-55338732	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55337800-55338600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr10:55338000-55338400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:55338000-55339800	Enhancers	Fetal Lung	lung
4	chr10:55338200-55338400	Enhancers	Primary hematopoietic stem cells	blood

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