Variant report

Variant	rs4398852
Chromosome Location	chr7:48588706-48588707
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 181 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:172)

rs_ID	r²[population]
rs10499684	0.87[ASN][1000 genomes]
rs11185608	0.87[ASN][1000 genomes]
rs11185609	0.87[ASN][1000 genomes]
rs12112361	0.95[ASN][1000 genomes]
rs12113920	0.95[ASN][1000 genomes]
rs12113960	0.95[ASN][1000 genomes]
rs12667982	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12669930	0.80[ASN][1000 genomes]
rs12669976	0.80[ASN][1000 genomes]
rs12670340	0.95[ASN][1000 genomes]
rs12671073	0.95[ASN][1000 genomes]
rs12672551	0.95[ASN][1000 genomes]
rs12673070	0.83[ASN][1000 genomes]
rs12674401	0.94[ASN][1000 genomes]
rs12674424	0.92[ASN][1000 genomes]
rs1316349	0.95[ASN][1000 genomes]
rs1317162	0.94[ASN][1000 genomes]
rs13237819	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1527835	0.93[ASN][1000 genomes]
rs1527839	0.91[ASN][1000 genomes]
rs1609212	0.95[ASN][1000 genomes]
rs1609213	0.95[ASN][1000 genomes]
rs1609214	0.95[ASN][1000 genomes]
rs17092931	0.95[ASN][1000 genomes]
rs17132425	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17132430	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17132439	0.95[ASN][1000 genomes]
rs17132443	0.95[ASN][1000 genomes]
rs17132460	0.95[ASN][1000 genomes]
rs17132479	0.95[ASN][1000 genomes]
rs17132491	0.95[ASN][1000 genomes]
rs1918580	0.95[ASN][1000 genomes]
rs1918581	0.95[ASN][1000 genomes]
rs1918586	0.95[ASN][1000 genomes]
rs1918587	0.95[ASN][1000 genomes]
rs1918588	0.95[ASN][1000 genomes]
rs1918589	0.95[ASN][1000 genomes]
rs1918594	0.85[ASN][1000 genomes]
rs1918595	0.94[ASN][1000 genomes]
rs1918596	0.95[ASN][1000 genomes]
rs1918597	0.95[ASN][1000 genomes]
rs1918598	0.95[ASN][1000 genomes]
rs1918600	0.92[ASN][1000 genomes]
rs1918601	0.95[ASN][1000 genomes]
rs1918602	0.95[ASN][1000 genomes]
rs1918606	0.92[ASN][1000 genomes]
rs1918608	0.95[ASN][1000 genomes]
rs2141251	0.95[ASN][1000 genomes]
rs2178086	0.95[ASN][1000 genomes]
rs2178087	0.95[ASN][1000 genomes]
rs2222731	0.95[ASN][1000 genomes]
rs34252471	0.95[ASN][1000 genomes]
rs4072501	0.95[ASN][1000 genomes]
rs4072502	0.95[ASN][1000 genomes]
rs4072503	0.95[ASN][1000 genomes]
rs41332948	0.95[ASN][1000 genomes]
rs4144061	0.92[ASN][1000 genomes]
rs4144063	0.95[ASN][1000 genomes]
rs4144064	0.95[ASN][1000 genomes]
rs4144067	0.95[ASN][1000 genomes]
rs4144068	0.92[ASN][1000 genomes]
rs4295610	0.95[ASN][1000 genomes]
rs4296993	0.95[ASN][1000 genomes]
rs4587280	0.95[ASN][1000 genomes]
rs55735040	0.87[ASN][1000 genomes]
rs55903755	0.94[ASN][1000 genomes]
rs55974693	0.87[ASN][1000 genomes]
rs56134922	0.92[ASN][1000 genomes]
rs56205257	0.95[ASN][1000 genomes]
rs56213942	0.94[ASN][1000 genomes]
rs56241442	0.95[ASN][1000 genomes]
rs56393952	0.95[ASN][1000 genomes]
rs56408667	0.87[ASN][1000 genomes]
rs56798342	0.95[ASN][1000 genomes]
rs56806901	0.95[ASN][1000 genomes]
rs57226042	0.86[ASN][1000 genomes]
rs57370511	0.86[ASN][1000 genomes]
rs57401097	0.95[ASN][1000 genomes]
rs57877708	0.95[ASN][1000 genomes]
rs58077564	0.95[ASN][1000 genomes]
rs58321909	0.93[ASN][1000 genomes]
rs58433353	0.95[ASN][1000 genomes]
rs58481134	0.87[ASN][1000 genomes]
rs58486673	0.95[ASN][1000 genomes]
rs58635193	0.95[ASN][1000 genomes]
rs59100514	0.95[ASN][1000 genomes]
rs59227959	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59243715	0.95[ASN][1000 genomes]
rs59549039	0.95[ASN][1000 genomes]
rs59673264	0.95[ASN][1000 genomes]
rs59872216	0.82[ASN][1000 genomes]
rs60184691	0.95[ASN][1000 genomes]
rs60813775	0.85[ASN][1000 genomes]
rs60918397	0.95[ASN][1000 genomes]
rs61171557	0.95[ASN][1000 genomes]
rs61310674	0.95[ASN][1000 genomes]
rs61602397	0.95[ASN][1000 genomes]
rs61649354	0.95[ASN][1000 genomes]
rs61706229	0.87[ASN][1000 genomes]
rs6583452	0.95[ASN][1000 genomes]
rs6583456	0.98[ASN][1000 genomes]
rs66522605	0.95[ASN][1000 genomes]
rs66591834	0.95[ASN][1000 genomes]
rs66729625	0.95[ASN][1000 genomes]
rs66763020	0.95[ASN][1000 genomes]
rs66785002	0.95[ASN][1000 genomes]
rs66793444	0.95[ASN][1000 genomes]
rs66909576	0.95[ASN][1000 genomes]
rs67001204	0.80[ASN][1000 genomes]
rs67040412	0.93[ASN][1000 genomes]
rs67074321	0.95[ASN][1000 genomes]
rs67081192	0.95[ASN][1000 genomes]
rs67187623	0.95[ASN][1000 genomes]
rs67208890	0.94[ASN][1000 genomes]
rs67249167	0.95[ASN][1000 genomes]
rs67249859	0.95[ASN][1000 genomes]
rs67294077	0.87[ASN][1000 genomes]
rs67298249	0.95[ASN][1000 genomes]
rs67316911	0.94[ASN][1000 genomes]
rs67331245	0.95[ASN][1000 genomes]
rs67370671	0.95[ASN][1000 genomes]
rs67398358	0.95[ASN][1000 genomes]
rs67744396	0.95[ASN][1000 genomes]
rs67744565	0.95[ASN][1000 genomes]
rs67748204	0.95[ASN][1000 genomes]
rs67764854	0.95[ASN][1000 genomes]
rs67845756	0.95[ASN][1000 genomes]
rs67852079	0.95[ASN][1000 genomes]
rs67875048	0.87[ASN][1000 genomes]
rs68007434	0.95[ASN][1000 genomes]
rs68029531	0.95[ASN][1000 genomes]
rs68084496	0.95[ASN][1000 genomes]
rs68110103	0.95[ASN][1000 genomes]
rs68168969	0.95[ASN][1000 genomes]
rs68179951	0.95[ASN][1000 genomes]
rs6944801	0.95[ASN][1000 genomes]
rs6954223	0.93[ASN][1000 genomes]
rs6955102	0.95[ASN][1000 genomes]
rs6957309	0.95[ASN][1000 genomes]
rs6963717	0.95[ASN][1000 genomes]
rs6966994	0.95[ASN][1000 genomes]
rs6970434	0.93[ASN][1000 genomes]
rs6972202	0.95[ASN][1000 genomes]
rs6977997	0.95[ASN][1000 genomes]
rs6980042	0.95[ASN][1000 genomes]
rs6980069	0.95[ASN][1000 genomes]
rs73094625	0.95[ASN][1000 genomes]
rs73109344	0.95[ASN][1000 genomes]
rs73109355	0.95[ASN][1000 genomes]
rs73109362	0.94[ASN][1000 genomes]
rs73109364	0.95[ASN][1000 genomes]
rs73109382	0.94[ASN][1000 genomes]
rs73109385	0.94[ASN][1000 genomes]
rs73109399	0.94[ASN][1000 genomes]
rs73109401	0.95[ASN][1000 genomes]
rs73111405	0.95[ASN][1000 genomes]
rs7455877	0.95[ASN][1000 genomes]
rs7457791	0.95[ASN][1000 genomes]
rs7776966	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7778895	0.94[ASN][1000 genomes]
rs7781149	0.95[ASN][1000 genomes]
rs7785069	0.95[ASN][1000 genomes]
rs7791044	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7792728	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7797852	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7804139	0.95[ASN][1000 genomes]
rs7806480	0.95[ASN][1000 genomes]
rs7807529	0.95[ASN][1000 genomes]
rs7810275	0.94[ASN][1000 genomes]
rs9690617	0.95[ASN][1000 genomes]
rs9691143	0.95[ASN][1000 genomes]
rs9691391	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830992	chr7:48497408-48686442	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv888008	chr7:48568425-48652224	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
3	esv2764056	chr7:48580914-48592025	Enhancers Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv11768	chr7:48581423-48592171	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
5	nsv514416	chr7:48581830-48592050	Enhancers Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
6	esv1818564	chr7:48581852-48592025	Strong transcription Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
7	esv2421774	chr7:48581852-48592025	Enhancers Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
8	nsv442042	chr7:48581852-48592025	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	nsv527625	chr7:48586783-48596337	Enhancers Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48588000-48589200	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr7:48588200-48588800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr7:48588600-48588800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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