Variant report

Variant	rs4400324
Chromosome Location	chr7:104420285-104420286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:104414380..104416720-chr7:104418892..104421394,2	K562	blood:
2	chr7:104419886..104422032-chr7:104422359..104424194,2	K562	blood:
3	chr7:104415972..104418312-chr7:104418747..104420588,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10256308	0.81[JPT][hapmap]
rs10270391	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs12540437	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12540497	0.85[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs12673938	1.00[CEU][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes]
rs12705276	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12705277	0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap];0.94[ASN][1000 genomes]
rs12705278	1.00[CEU][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13236549	0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap];0.94[ASN][1000 genomes]
rs13238018	1.00[CEU][hapmap];0.92[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13243476	0.92[CEU][hapmap];0.86[JPT][hapmap];0.82[TSI][hapmap]
rs2465065	0.81[JPT][hapmap]
rs34557807	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34680468	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34838562	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34911344	0.86[EUR][1000 genomes]
rs35331234	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35708701	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56855677	0.92[EUR][1000 genomes]
rs57968847	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58810999	0.92[EUR][1000 genomes]
rs61651012	0.93[ASN][1000 genomes]
rs67775507	0.91[EUR][1000 genomes]
rs6950832	0.92[ASN][1000 genomes]
rs6964274	0.81[JPT][hapmap]
rs73714125	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429790	chr7:104314049-104488049	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv429792	chr7:104400049-104488049	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv5887	chr7:104401250-104491604	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1030875	chr7:104409391-104472647	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1028479	chr7:104409391-104479087	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv528392	chr7:104411273-104466675	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv522743	chr7:104411273-104486707	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104413800-104424000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:104417400-104422600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:104420000-104420600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links