Variant report

Variant	rs4400383
Chromosome Location	chr8:63888145-63888146
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10090886	0.83[EUR][1000 genomes]
rs10093212	0.80[EUR][1000 genomes]
rs10100456	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10106324	1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs10808728	0.87[EUR][1000 genomes]
rs11992351	0.80[EUR][1000 genomes]
rs12115136	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12335094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12550400	0.82[AMR][1000 genomes]
rs12679222	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13272238	0.80[EUR][1000 genomes]
rs1455574	0.83[EUR][1000 genomes]
rs1869729	0.80[EUR][1000 genomes]
rs2353388	0.85[EUR][1000 genomes]
rs2736676	0.85[AMR][1000 genomes]
rs4237060	0.80[EUR][1000 genomes]
rs4237061	0.80[EUR][1000 genomes]
rs4279586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4352845	0.85[EUR][1000 genomes]
rs4377959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4397399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4413770	0.85[EUR][1000 genomes]
rs4446729	1.00[CHB][hapmap];0.85[AMR][1000 genomes]
rs4449783	0.80[AMR][1000 genomes]
rs4573267	0.83[AMR][1000 genomes]
rs4592024	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4739021	0.80[EUR][1000 genomes]
rs4739049	0.82[AMR][1000 genomes]
rs5007413	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6472066	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6998134	1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6998383	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6999604	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7000012	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7003413	1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs7010484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7387326	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7388305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs7463670	0.80[EUR][1000 genomes]
rs7818905	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7830289	0.80[EUR][1000 genomes]
rs7839216	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7839874	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1033527	chr8:63673915-64073735	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv890964	chr8:63848556-63898146	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63868600-63895800	Weak transcription	Fetal Brain Female	brain
2	chr8:63878000-63892000	Weak transcription	Brain Germinal Matrix	brain
3	chr8:63888000-63888200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

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