Variant report

Variant	rs4403235
Chromosome Location	chr6:74782905-74782906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12523779	0.82[EUR][1000 genomes]
rs34261519	0.81[EUR][1000 genomes]
rs4235884	0.92[EUR][1000 genomes]
rs4706571	0.95[EUR][1000 genomes]
rs4708108	0.82[EUR][1000 genomes]
rs72964264	0.81[EUR][1000 genomes]
rs72964267	0.81[EUR][1000 genomes]
rs7746000	0.81[EUR][1000 genomes]
rs7776197	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030389	chr6:74606701-74811706	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3394316	chr6:74630005-74935625	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv603733	chr6:74666559-74944460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3327625	chr6:74716120-74971605	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3440413	chr6:74741688-74791357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv886161	chr6:74765488-74800529	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1017333	chr6:74776830-74907758	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv538307	chr6:74776830-74907758	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74776400-74783000	Weak transcription	NH-A	brain
2	chr6:74777200-74783000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:74778800-74783000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:74780400-74783200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:74781400-74783000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:74782800-74783600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:74782800-74783600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:74782800-74783800	Enhancers	Fetal Intestine Small	intestine
9	chr6:74782800-74784200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:74782800-74784200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:74782800-74784200	Enhancers	NHLF	lung
12	chr6:74782800-74784400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:74782800-74784600	Enhancers	Fetal Muscle Leg	muscle
14	chr6:74782800-74784600	Enhancers	Fetal Stomach	stomach
15	chr6:74782800-74784800	Enhancers	Osteobl	bone
16	chr6:74782800-74785400	Enhancers	NHEK	skin
17	chr6:74782800-74785800	Enhancers	NHDF-Ad	bronchial
18	chr6:74782800-74786000	Enhancers	Colon Smooth Muscle	Colon
19	chr6:74782800-74786000	Enhancers	HMEC	breast
20	chr6:74782800-74786200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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