Variant report

Variant	rs440373
Chromosome Location	chr7:101789993-101789994
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101783854..101785897-chr7:101787685..101790178,2	K562	blood:
2	chr7:101788842..101790644-chr7:101792931..101794540,2	K562	blood:
3	chr7:101650955..101653343-chr7:101787745..101790282,2	MCF-7	breast:
4	chr7:101789301..101790857-chr7:101825048..101826732,2	K562	blood:
5	chr7:101789603..101792075-chr7:101795713..101797542,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16869536	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28688706	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs382934	0.80[AFR][1000 genomes]
rs386207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs395848	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs396162	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs409419	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101760200-101796000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr7:101760400-101795800	Weak transcription	Left Ventricle	heart
3	chr7:101761000-101795600	Weak transcription	Colon Smooth Muscle	Colon
4	chr7:101763600-101790400	Weak transcription	Brain Anterior Caudate	brain
5	chr7:101765200-101801200	Weak transcription	Pancreas	Pancrea
6	chr7:101765600-101801000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr7:101766000-101796000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:101766000-101796000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr7:101766000-101796000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr7:101766200-101793800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr7:101766200-101796000	Weak transcription	Esophagus	oesophagus
12	chr7:101766200-101796600	Weak transcription	Brain Germinal Matrix	brain
13	chr7:101768000-101793800	Weak transcription	K562	blood
14	chr7:101768800-101790200	Weak transcription	Spleen	Spleen
15	chr7:101768800-101793800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr7:101768800-101795200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr7:101769000-101790000	Weak transcription	Ovary	ovary
18	chr7:101769000-101792400	Weak transcription	Gastric	stomach
19	chr7:101769000-101795000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr7:101769000-101795400	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr7:101769000-101795800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr7:101769000-101795800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr7:101771200-101795400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr7:101771400-101796600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr7:101772000-101795200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr7:101772000-101796800	Weak transcription	Liver	Liver
27	chr7:101772000-101801600	Weak transcription	Duodenum Mucosa	Duodenum
28	chr7:101773400-101795400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr7:101773600-101792800	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr7:101773600-101795200	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr7:101773600-101795800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr7:101773600-101801200	Weak transcription	Aorta	Aorta
33	chr7:101773800-101796000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:101774200-101801200	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr7:101776200-101792000	Strong transcription	Fetal Intestine Small	intestine
36	chr7:101777400-101812800	Weak transcription	Fetal Lung	lung
37	chr7:101777600-101790400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr7:101777600-101795200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr7:101777800-101790600	Weak transcription	Osteobl	bone
40	chr7:101777800-101796600	Weak transcription	NHLF	lung
41	chr7:101778000-101793600	Weak transcription	NHEK	skin
42	chr7:101778200-101796600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr7:101778400-101790200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr7:101778400-101796000	Weak transcription	NH-A	brain
45	chr7:101778400-101812000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr7:101778600-101793000	Weak transcription	Hela-S3	cervix
47	chr7:101778600-101794400	Weak transcription	HepG2	liver
48	chr7:101778600-101795800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr7:101778800-101795200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr7:101779200-101796000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links